| mature miRNA: TTACATTGTGAAACGGAGGTA species: Avena barbata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|240344077|gb|GR347041.1|GR347041 CCOX2968.g1 CCOX Avena barbata root, pooled from different levels of rain and nitrogen (H) A TTACATTGTGAAACGGAGGTA EST sequence (targeted fragment marked with yellow): CCGGAGGTGGGCTCTCCTCCTTTCCGGGGTGGCGGAGGGAGCTGCAACGTTGCCTTCACAGTAGCGGCGGGTGGCGAGGGAACTCCAGGGAGGATGCCGGAGGAGCTCGACGCGGTCCCCCGAGATTGCTGGGAGGAGGCCACAGGGAGGAGCTCCACCTCCCTAGAGATTGCAGGGAGGAGGCCGCAGGGAGGAGCTCCACCTCCCCCGAGATTGCAGGGAGGAGGTCGCAGGGAGGAGATCCGCAGGGAGGAGGCCGCGGGGAGGAGGCCGCAGGGAGGAGCTGGACAACGACGGACCTGGACCTATGATCGCGGGATCATGGGGCGCCGGGGATCGCGGGGCGCCGCTGATTGCGGGGGTCGCGGGGATCACGGGGCGGCGAGGATCGCGGGGCGGCGTGGATCGCGGGCGCCGGGATCGCGGGGCGGCGGTGATCGCGGGCCGGGATTTCCAAGTTCAAATTTTGAAATTATACTAATTTGCAACGATTTGAGGACAGTTTGGAGTTTTTTGTAAATAGTGCTTTAAACTGCTCCCGCGAACAATAAAACGGGTCGGAGGGAGTACTATATTGTCGTTTCAGAATGTAAGGCGTCCCTGATTTCGCTGGTCAACGAATTACAAATTTGGCAATAATTTGTAACTATAATATTATCCACAATACTAATGTAAAGATAAAGGAAATGAAAGAATTTTGCAACACATATAGACAATTCAATTT | |||||||||
gi|240321232|gb|GR337356.1|GR337356 CCOU3456.g1 CCOU Avena barbata leaf, pooled from different levels of rain and nitrogen (H) A TTACATTGTGAAACGGAGGTA EST sequence (targeted fragment marked with yellow): GTCAGAGACACTAGAGGACTGTCAGGAGGAGAGCGGTCTTTTTCGACACTCTGCTTCACCTTAGCTCTTCATGGAATGACAGAAGCACCTTTTAGGGCCATGGATGAGTTCGACGTGTTCATGGATGCGGTGAGCCGCAAAATAAGCTTGGACACCCTCGTAGATTTTGCTGTTGCACAAGGGTCACAGTGGGTATTTATAACACCCCACGATATCAGCATGGTGAAGCCTGGGGATTGGGTCAAGAAGCAGCAGATGGCTGCCCCTCGTGGTTGACTCAGGACTGGGTTGACTGTCTAATTGTCCTCAGTAGTCAGTCACGTGTATATCTCGTAGCCTTAGGGTCCACTGGACAGAATCTATCTGGAACTACTTAGTTTCCTACTACCTCCGTTTCACAATGTAAGCTTTTTAGCAAACTAAAATAGCTTACTACAAAGGCTTATATTGTAGAACGGAGCGAGCATTTAAGTTGTACATAGCTTGTGTTGAAGCGAAAACTTAGCCAGCATCTTAAAAAGAAAAAACTTAGCC | |||||||||