| mature miRNA: ACTCCCTCCGTCTCAAAATAG species: Avena sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|226984770|gb|GO587145.1|GO587145 03-ASAEN2NG-UP-016_H12_28MAR2007_082 ASAEN2NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): GAGATAATTCAACACTCTGTCAAGCTACTCCCTTTGTTTCAAAATATAAGATGTTTTAGCTTTGTGAAACAAACTTATCTAGACTTATTTTAGTATGTAGGTTCACTCAACTTTGAGGTGAATCTATACACTAAAAGAAGTGTAGATTTATTTCTTCACAAACCTAAAACATTTTATATTTTGAAACGGAGCGAGTATTTTGTATATGCATTCATGCTACCATGTGAAAACCAACAAATTTCGTACCTTCTGTTGAGTGAATTTTGATTTCGTGGAC | |||||||||
gi|226984764|gb|GO589965.1|GO589965 03-ASAEN3NG-UP-010_B10_24APR2007_078 ASAEN3NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): ATCCCCACTCCATGTCTGGAAAATTTCCATGACCATAGAGAGAGAGCGAGCGAGAGAACTGTTCAGGCGGCGACGGCCCCGCGGCTCCTTCCCCTCCGCCACCGGTCCTCTGCACCGCCATGAAAGAGTTCCTCTCTGGGTGAAAGCCTATTTTGAGAAGGAGCGTGGTTGGAAGAACAAGGATTTACCAAAGAAAATTAAGGGGTTGGCCTTGTCTCAGTGGGCTTACAAGGAATTCCTTCAGATGGAAGATGTGTGTTAGCATGCTGTCAATATTAGCCAGAATGGAGAGGCTGATGTTCGGACTTATATATGGGGGAAATACTCAGTTTTCTTCTCAAAAGGCATTTAAAGTTTTAATTGGTTTTCAGCCAGTGCCACCTCACTTCAAATGGATCGCTAGAGCTGTCAGCAGAAAGTGTTATTTTGGTTACTCTTGAATGAGAGACTAAATACTACTCCCTCCGTCTCAAAATAGATGTCACAGATTTATCAAAATTTAAATGAATCTAGACATTATTTAGGATATAGATACATCCAAATTTTGTGAAATTCCCGACACCTATTTTGAGACGGAGGAAGTACTAGAAACCTGCTGGCTAGGAAAAATTTCCAAGTTCAATCCTACAACTGTGGAACATTACAATGTGCA | |||||||||
gi|50356630|gb|CN815270.1|CN815270 HRO4507_G11_N21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena sativa cDNA clone HRO4507_ ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): TTTGCTTCTGGGGGTGTTTAAGACATGAAAAAATACTTTGTACTAGATGGATACGCGCGCTTTGCCGTGCCGCCTGCCTAATGTTGTGCAACAGAGCAGCAGTGGCAACGCATCTGTCGAGCAGTTTGATCGGTTTTTGACACGGTGTTAGCGTTTTGGTATCTACATACATGTGTATTTAAACAAAGGCATGTCAGTTATTTTGGGACGGAAGGAGTACTTGAAATAAATTCAAAAAAATATTGTAGTTGATCTTACTCTAAATTACAAGCGTGGAACGACTACCAACTTACAAATCACATGCAAGAAGACACTTGACATGCAAGAAGACACTTGACAGACACACGGAAGTCAGGACTGGAGGCNCCTTAGCCAGATTGTATCGCCTCACCCGCAAATACCCCTTATCATCAATATGCAACTTCCACTTGGTCGTGATTGACCTTGCAAGTTTTATCTGCTGTGAGCTAGGCCACAAGGCAGCTAATGTTATTGGATGCCGACGAACTTGCCCGAC | |||||||||
gi|226983106|gb|GO589486.1|GO589486 03-ASAEN3NG-UP-004_G12_24APR2007_084 ASAEN3NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): GTTACTCCCTCCGTTTCAAATTAACTCGAGCAACTTTTTCTAGGTATTTTAGTACTATGTAGATACATATGTTTGGAAACAAGTGTTGCAGATTTGTCTAGATACATGTGTATCTAGACCGTTTTAGTGTGTAGAACATGCATATCTAGATAAATATGCGACACTTATTTCTAAATGTAAGTAGTATGTATCTAGACAAATGTGCGTTAGTTAGTTTGGAACGGAGGGAGTATATTTGTTATGTGAACCACTATTATGTATAAATAATCAGACCAAACGTTCTATTGTAT | |||||||||
gi|50356750|gb|CN815390.1|CN815390 HRO4509_B05_C09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena sativa cDNA clone HRO4509_ ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): CGGCACGAGGATTCATTCTTTGACAGTGATAAGCTTGTTGAGCACACTGTTGGTATACCGTCGGTTGCAGAGATTTTTCAGGTCCACAGTGAAGCATTCTTCAGAGATAACGAGAGTGAGGTACTAAGGGATTTGTCGTCAATGCATCGATTAATTGTTGCAACTGGAGGTGGTGCGGTGATACGACCAATCAATTGGAATTATATGAAGAAAGGGCTCACTATCTGGTTAGATGTTCCATTGGATGCACTTGCAAGAAGGATTGCTGCAGTGGGTACAGCTTCACGGCCCCTCTTGCATCAGGAATCTGGTGATCCTTACACAAAGGCCTATGCGAAGCTTACAGCACTTATGGAAAAAAGAATGGACTCGTATGCTAATGCAGATGCCAGAGTTTCCCTTGAAGATATCGCATTCAGACAAGGACATAATGATGTGAATGTACTTACACCAAGTGCCATCGCTATTGAGGCATTGCTAAAGATGGAGAGCTTTCTTACTGAGAAGGCCATGGTCAGAAACTGACCGCTTCTCTGTGGTTATACAGAACAACGATAACCAATGGTCCTTGTTCATTGTGCTACCTTTGCATAAGACAATCTTCTTAATATAGCCAGAGCTTGTTTGTTCACCCGATATGACAGTGGATAACTTCAGTTTCTACATACTGTAACATCTGTTGTGTAAATGAAAATGTAAATAGCTCCCAACAGAGACAATGTTTGTCTTGTTGAAGTATAATACTTAATCCGTTGGGAATAAGTGTCACAGATCTGCGACACTTATTTCGAACGGAGGGAGTAGATGGGATTTGGCAGCAAATTGCAATATCACTG | |||||||||
gi|226980951|gb|GO585924.1|GO585924 03-ASAEN2NG-UP-001_E02_23MAR2007_008 ASAEN2NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): GTAATGGTGTGAAGTTATATGGGGTTATTCGTAAATTATAATTTGAACTAACCCCACGTCAGTTATTTTGGGACGGAGGGAGTAGTATATGCGATATACGCGCAGGTAAGTTTCTTTGTTGGAAGTACAGATACTTCTTCTGTAACTAACACGCCATACGTATGTACG | |||||||||
gi|226987475|gb|GO594116.1|GO594116 03-ASAEN3NG-UP-057_G09_27APR2007_067 ASAEN3NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): AGCTACATGTGTTATTGGTCTCCAAACTAAAACTGGCAAGATACATGTTTGTATTTTTAGTAACGATGCAGGTTAATCGCTTGTCTGTACTTATCTCCATAACTATTGCGACGAATCTTCTTTTGGTGTCATAAGGATGACAGGTTTACTGATATTTGTTGCATATTTTGAAACGGAGGGAGTACAAATCAAACATTTGCACCAGTGGTACAATAGCAATAGGATTTTTTTCTATATCATTAGAAGTGGTAGCAAGGAAAAAAAATGCTCGCCATCCCATTAGAAGAGTTATAAGGTAGATATTACTGACTGCATTACACTCTGTCTAGACATTGAAATACCATTGAAGATTTCAGGAAAATGGTACTTATATTATTTGTAGAACACGACTGTAATACATTTATACATTGTAAATTAGGACCATGGTAAGTGACACAAGTCCTTCAAAATGCTTTAACTTTAGCCTACTTTGAAAAAAAGAAGGCATATGATCAATGTGGAAATTTGATGGTAAATTGTTAATCTTCAGGGGCTGCTATGATGCTTGCGGAGCTAGCAATGGAGGCTGGTTTACCAAAGGGGGTGTTGAACATTGTTCATGGTACC | |||||||||
gi|226980212|gb|GO585151.1|GO585151 03-ASAEN1NG-UP-046_C11_04JAN2007_091 ASAEN1NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): GTAGGCGCCGGCATGCCCGAGAGCTGCCGGCAATCGATTCCGGTAGGGATCGATTCTTCCCCACTATTCCATTACTACCGACAGCCGATGCTGACTAGCTGAGCGAGATCTTGGCGACATGTGAGAATCCTAGGGGGGGCGATTCTGCTCAGCACGAGGACCTGCGGCCACGCGAGGATCTGGGCGACGCGCGCATGTGGAGCCGCGAATTATGGATCACCGGTTCGGACAGTTTTGTAGGGTAGTTTTGTACTTTTCCTCAGTTTTGGACGCTGTCCGAAAATCCCAGAACGTCTTGTATTCTGGAACGGAGGGAGTATAAGGTAGCGCACACGAAGTAATGCTCTTTTATCTTTTAGTATCCAAGC | |||||||||
gi|226975796|gb|GO582232.1|GO582232 03-ASAEN1NG-UP-013_F12_13DEC2006_086 ASAEN1NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): AAGGGAGATAGTGCATTTCGACAAAAAGATTTTAGCATGGCCATTGATTCCTACTCTCAGTTCATTGATGTTGGTACCATGAATTCGCCAACAATCTTTGCCAGGCGTTGCTTGTCGTATCTCATGAATGACAAGCCACAACAAGCTCTGAATGATGCCGTGCAAGCTTTGGCGATATTTCCTACATGGCCAACTGCATTTTATCTTCAGGCGGCGGCCCTATTTTCATTGGGAAAAGAAAAGGAAGCTCGAGAAGCACTCAAGGATGGTTCAGCTATAGAGACAAGGAGTAAGGGGAATTAAAGATGGATAGCTGAACATCAGGTGCTCTTCACTTGTTGGAAACTGCAGCAGGTGTGATTTGGATTAGGAGCACACAAGGGGACTCTTGGTTAGCCTTGTGATACATACATGATTTTTATGTATATATGGAAAACATACTTCCTCTGTTTCATACTATAAGACGTTTTGGTAGGCTAAAATAGCCTACCAAAACATCTTGTGTTTTGAAACGGAGGTAGTACGTAGTTAGACTAGACCGCAGAGAGGGCAAGAGAGCCTGCTCATCCAGGTCACTCTGCCGTATAAAAGAGTAGACAGACATGAAGAAAGGTGTTGTGATGCATCTGATCATGTTATGATGGTCACAGATTGTAGGG | |||||||||
gi|50358853|gb|CN817493.1|CN817493 HRO4466_C10_F20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf Avena sativa cDNA clone HR ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): CGGCACGAGGGTTAGTTCTGGATGACTGCAAGACTCATCATGTCGGTCTGTGATGGTGGTCTCTTGTGTTTGTAACTACCGTAGTATAGCCCAGGATTATGCACCTTCCTGCCATGGTAGAATTAGTCCAGCCGCAGCTACGTAGTGAGTATGATGTGCAGGAGCATCTCATCTCGGTTGCTAACGGGTAATCCTGTAGGAATGACAGCGTAGCTACTACTCCCCCCGTTTCAAAATATAAGATATTTTAGCTTTGTGAAGCAAATGTATCTAGACTACTTTTAGTATATAGGTTCACTCATGTTTAGAATGAATCTACACACTAAAACAAGTTTAGATACATTTTCTTTACAATCCTAACTTTATATTTTTTTGGAACGGAGGGAGTACTGATCAACTCTGATGGGATGAAGTCCTGCAAAGTGTATTATTTTCCTGGTACTTCCAAATATGCATTCATTTGTCTGCGGTAGGCTAAAAAAAAAAAAAAAAAA | |||||||||
gi|50359438|gb|CN818078.1|CN818078 HRO4472_A07_A14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf Avena sativa cDNA clone HR ACTCCCTCCGTC-TCAAAATAG EST sequence (targeted fragment marked with yellow): CGGCACGAGGCAGGTATTCTTGAAAAGAGATCAGACTAGAAGATACCGTGGTGGTATAATCCCAGATGGCTCTTTTCGAAATAAGAGATTCCTACTAGAAGATACCGTGGTAGTATTGCTGACAGCTACATTGTTCACGGTGGCTGAACTTTACTGCAATAGGCTCATTAGGGTGCTTTGACTAACGTGTACATCTCACATCAAAGATTTCTAGACAAATACAAGTCATTTATTTTTAGGACGGAGGGAGTACTATTTGTTTATAAGAATAAATAGTGCAATCCTGAACTAGAAGCACTTGGGCGTGTATAACCTTATATCCTTGGAGAAATCGGGGTGCCAAAATGATACTCTCTCGGTCCGGAAATAAATAACTTGCATTTGCTAGATCCGTACATACCTATACACTAAAATCGTTTCTAGATACATGCGAATCTAGACAACTTTTAAGTTAAAAAAAAAAAAA | |||||||||
gi|226980389|gb|GO584068.1|GO584068 03-ASAEN1NG-UP-034_B11_04JAN2007_093 ASAEN1NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): TGATCGTGCTGACGATGACGGCGTCGCCGATAATAAGATGGTGCTAGCAGATGGTGACAGTTGATATGTTTCCTTGTGGGGATCTTGTATGTGAACATTTGGGGTACAGTTCCATCTTTCTGATCAGGTTAAGTAGTACTCCCTCCTTTTTAAAATATAAAATGTTTTAGCTTTGTGAAGAAAATGTATCTAAACCACTTTTAATGTGTAGGTAATGAACCTACGTATTAAAGAGGTCTAGATACACTACAAAGAGGTCTAGATACACTACATCTTATATTTTGAAACGGAGGGAGTATTGAGGTGTGGATCGCCCGGCAATAAATTGAGCTATGATGCTACTGGTAGACT | |||||||||
gi|226977702|gb|GO586525.1|GO586525 03-ASAEN2NG-UP-009_A04_23MAR2007_032 ASAEN2NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): CACGGGATACTGCCAGTCAGACAACGGCGGCATATGTTGCTGCCTGAAGTGAACGCCGACCGTTAAGATGATGGAACAATAGTAGTACCTACTACTTCCTTCGTTTTAAAATATAAGATGTTTTAACTTTATAGAAAGAATGTATCTAAAGTTCTTTAGTATGTAGATTTACTCAGGTTTAAAGTAAATCTATACACTAGAAAAAGTTTAGATACATTTTTTTCACAAACCTAGAACATCTTATATTTTGAAACAGAGGGAGTACAAATATATCCCTCGTAATGGCAAAGAATTAATTTATTCATGCTCATC | |||||||||
gi|226978679|gb|GO584249.1|GO584249 03-ASAEN1NG-UP-036_B11_04JAN2007_093 ASAEN1NG Avena sativa cDNA, mRNA sequence ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): TTGAATGAATCTATATACTAAAACAAGTCTAGATTCATTTTCTTCACAAATCTAAAACGTCTTATATTTTAAAACGGAGGGAGTACACATGTATTTGTGCGCATGTATGGCTTGGTGAAATAAACTTGTTTGAAAATTA | |||||||||
gi|50360384|gb|CN819024.1|CN819024 HRO4474_B02_D04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf Avena sativa cDNA clone HR ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): CGGCACGAGGGAGCACGCAAGTGCTAATGTGACGATTGTTCTAATTGGAAACAAATGTGATCTGTCTGATAGACGTGCTGTCACCTACGAGGAAGGTGAACAGTTTTCCATTGAGCATGAGTTGCTATTTATTGAGACATCTGCCAAAACTGCAGAAAATGTTGAGAAGGCTTTCGTTGGGACTTCTGAAATAGTATTAAAAAATGTTGAAGATGGTCTTCTTGAGTTATTTTAAAAAGGGTCTGACTGGTCTTCTGAAGGGCCAATCTCTTTACTGGAACAGTTCATATCAGGCCATGTAAAGGTTTATATAGCCTGGCGGAACAATGTACTGTAGTTTGTTTGGTGGCTTTATTCTACTCTCCGTCTCAAAATAGATATTGAAAATTTGTCTAAATTTGAATGTACATAGTTCGACATCTATTTTAAGACGGAGGGAGTATCAACAATCGACGTTCTATTCAGTGAGCAAATAATTCTCTGCGCACTCTGACTTAATCCATGTNGTATGGCTTTTTAGTACGTACTGTATAATTTATGACCCTGAATGGAGATAATATGTATTGTCATTTGAAGAAATTGTTATGACGACAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCG | |||||||||
gi|50360842|gb|CN819482.1|CN819482 HRO4406_E09_I18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated leaf Avena sativa cDNA clon ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): CGGCACGAGGATTTTGAGACGAAGGGAGTACAATTTCTAAACTCCTTCTGTACATCTCATTCATTCAAGTTTTTATGCTTTTGTATTTGCAGTGGTTACCGGTTCGGGTGCCGAATCAGAGTCCTGATGGCTTTGGGTTGTTGCCTTTGTAAGACGTCGGCATTGACAGGCTACATTGACCATGGTTGGAGGCCATCAGCGCTGCAGGGACATCGAGCATGATCGACGGGGGCAGCGGTATTGATAAGTGGAAGAAAGCAGTTATCAAGGCCACGCTTGACAAGGTTGTAAGATGCCTAGGCTACTCCTGAGTAAGGTCGGTTCATGACTTCATGCGTTGGTCTCACTTGGTTGGTGGACTTCTTCCTTCTTTCGGCTGCTTTTTTGCTGAAGGTTTTTCAAAGCTACAGTTTAGTTTCTTAGATCATTTTTCAGTATCTATCAACAGTTCCATTTACTTCAGTTATGATTGGTATTACTAGCAGTAACGTCCTAAATGTTCTTGAAACTGCATATGTTTATTGCAAAGTGGATTAAAAAATCCATGGCTTATGTGATTGTGATCCTACTTGTATAAAAAAAAAAAAAAAAAAA | |||||||||
gi|50359789|gb|CN818429.1|CN818429 HRO4460_F06_K12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf Avena sativa cDNA clone HR ACTCCCTCCGTCTCAAAATAG EST sequence (targeted fragment marked with yellow): TCGGCACGAGGGGACAGTATCAGTAAGCTTGGATTTCTCGGTCGATTTAGAAGTTGTTTTCCTGCTGAAGCTGCTTGAGAGCTGTCCTAACCTACAACACTTGACTGTTTCGGCTGCTGAAAGCAAGAAGAAAGATGCGTGCCCAAGTATCCCTAATTTCAAGGGGATGCTGGCAAATGTATCGTGCATAACTGGGAGCCTGGCGCAGATCAACTTTCTTGGATTCAAGTCTGGACAATATCAGAAGGAACTCCTCGTTGCCCTACTAAATCAAACAAATAAGCTGAAGAAGATTGGGGTGCAGTTTCCAGAGAGTGAAGAAGTTGTTTTGAGGTGGGCTTTGAACCAGAGGAAAGCCCCAATCGAGAGAAGATCTTCTCTGTTTAACCTCTGCTACTTGGAGTTGGAGTATCCCTGATAGTTTACACATATATTTTGAAACGGAGGGAGTAGGTAGCAAGGTTTGCATGACACTACGCGTTTACGCTTCCCATGTACATACATTTGTTTTCCCTTGACTTGTCTACATGACATGGATTGCAACCTTGAGTGGACGCATTCTTCACATATCTAGGTGAAAGTTAGAACACAGGAGAAATTGAGAAAAGGTACATTAGACATGAGATGTATGGAAAAAAAAGCACAACAGAGGATTCATCTTCAGATAAGGGCATATGGGTGGCAGCAAAAAAAAAAAAAAAAA | |||||||||