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mature miRNA: CAAGATCATCCCTCATGCTGT
species: Avena sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|50361062|gb|CN819702.1|CN819702 HRO4403_B07_D13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated leaf Avena sativa cDNA clon 

CAAGATCATCCCTCATGCTGT
|||||.|||||||| |||.|
GTTCTGGTAGGGAGCACGGCT

EST sequence (targeted fragment marked with yellow):
TTCGGCACGAGGGATGGTCTTGTTGAAGGTGGCAAGAAGGAAATCTTCACCCCGATGTACTTCTTTGTGGTTCGGAAGCCTCTTTCAGAATGAACAACTTTCAGGTTTGAAGCCAGACAAGGCAACAAGATACATTTTGAAGAAGCGGGCTTGGGGAGTTTGGTTATGCCTAGAATCCTGGTATCTGACCTGTAGAAGTGAAATAGTAAACGTGTTAAGTTTCTGTTTGTTCTGTGTTCAATGTTGAGCTTTCTGTTTGTTGGTTTTGTCTAGTGCGAGAGCTTTTGATTCAAGCGGTCCGTCTGTGGATTGCTTGTCTAGTCGCGCTATTAGCTGATGGTTTGAGACCCTTGTGGTAAGCTATTAGTGACATAAATAAGCTGAATGCAGTTTTCTTTCCCGTCATGGTTTGCAT