miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CCTCAGTCCCAAAATAAGTGA
species: Avena sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|226980951|gb|GO585924.1|GO585924 03-ASAEN2NG-UP-001_E02_23MAR2007_008 ASAEN2NG Avena sativa cDNA, mRNA sequence 

CCTCAGTCCCAAAATAAGTGA
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GGAGGCAGGGTTTTATTGACT

EST sequence (targeted fragment marked with yellow):
GTAATGGTGTGAAGTTATATGGGGTTATTCGTAAATTATAATTTGAACTAACCCCACGTCAGTTATTTTGGGACGGAGGGAGTAGTATATGCGATATACGCGCAGGTAAGTTTCTTTGTTGGAAGTACAGATACTTCTTCTGTAACTAACACGCCATACGTATGTACG