| mature miRNA: ATTTGGGATAGAGGGAGTAAT species: Barnadesia spinosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211682330|gb|GE542501.1|GE542501 CCHS2884.b1_G02.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS2884, mRNA sequence ATTTGGGATAGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): TTGGAGGGAAAGATCCCTGAGAAGATTGGTAAGTTGAAGAACCTTGAATCTCTTGATTTCTCAAACAACAAACTTTTTGGATCCATTCCCCCAAGCTTGTCGAATCTAAACTCTCTAAGCCACTTGAATCTTTCGTATAATAACTTAACCGGGAGAATTCCAAGAGGTAACCAATTACAAACCCTTGTTGATCCTTCAATCTATATGGGCAATAGTCAACTTTGTGGGGAACCAATCTTGCAGAGTTGCCCTGGTGATAAACATGAATCATCTAACGATGATCATGAGGTTGCCAGCCAACATGAAGATGGTTCGGATCGATTATGGTTTTACGCTGGCATAGGGCCTGGCTTGTTCACTGGATTCGTGGGATTCTGTACTATTTTGCATTTCAAGAAATCTTGGAGGTATCAATACTACTTGTTTATCGAAAACTGCTACAACTGGTTAGTGGTCGCAATTGCAGTTAAAGTAGCTGTTATCCGGAGGAAGTTTCAAAAAAATTCACAGGATATTGAATTGAGCTCAAACAGGTTAGTGATGCCTCTCTATCTGTCTATGTATCCTCAAATCTTTGATAATATATAGTACTCTCTCTGTCCCAGAGTCCACATTTGATTTTTGAGTATCAAAATATGTATTTTTTAACTTTGCATTGAGAAGAAAATATGTATA | |||||||||
gi|211667364|gb|GE532126.1|GE532126 CCHS18838.b1_K05.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS18838, mRNA sequence ATTTGGGATAGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): ATGCTGAATGGGATTACAAGCATCTGCGGGAGTCTTCATACTTCTTCAATAACATTTCCTTTGTAAAGATTCTTCGTTTGTGTGTCGTGTTTTTGTGCGGGTCACGATGACCTTTTTACGAGGGTGGATGCTTGGATTTTGGGTATAGGGGCCGAGTCGATGTAGATGAGGATTTCTATGACGGTCCAGATAATTCAGACTATGAAACTGATGATTCCGACGGTAGCTTTCATAACATATACTCCCTCTGTTCCAAATAGAAACAATCATGTTTTGACTTTTGAGGGTCAAACCTAGTTCTACTTTTTAAAATGTAGTTATAATTTTTTCTACAAACTAACACCATTATTTGAAATATAAAATCAACACATTTGACACTCAAAATCAAATGTAGACTTTTTTCAGGATGGAGGGAGTAATACATAAGGTGATGTTATGTTTGGTAAAACTGAATGATCAAGTGGTTGACAGTCAAGAGACTCTTAGT | |||||||||
gi|211677065|gb|GE535824.1|GE535824 CCHS22377.b1_B03.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS22377, mRNA sequence ATTTGGGATAGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): ATTCGCACTTTGATTTCGATCCTTTCTTTCTTTCAAATCAACATCCAAAGATGATCACAGATCAAGATTTGGGGTTCATGGCCAACTTCCTGGGCATATTCATATTTGCCCTTGTCATTGCTTATCATTACGTGTTGGCTGACCCCAAGTACGAAGCGTTCTAAAAGAACAAGCTTCAGGTATCATATCATATGTAGTTGCAGAGGAGTTATAATTTTAGACTGACTATAAAGATATGTTTTAAGGATGATAATAAATCTTTATGCGAACTTTTCAAAGGTCCTGTTGCTGACATTTAAGTATTCGTAATTTTGCTTTTCTCGATTTTTTGTTTGTGTATGTCACTTGAAGTTGACAGTAGTATTCTTTCTGTCCCAAATAAAAT | |||||||||
gi|211696756|gb|GE550576.1|GE550576 CCHS9344.b1_P07.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS9344, mRNA sequence ATTTGGGATAGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): GAAACTTTTTAGAGAGAAATTAAGTTGTTTAGAAGCAGAATCAAGGTACAATCATGGCTGATCATTCAGATGATTTAGACCAACTTCTCGACAGTGCTTTGGATGATTTTCAGACCCTCAATCTTGGTTCTTCTTCTCAAAGAGATGGTGAAGGAAACAAAGGAGAGGCTTCTTCATTGCCCGATGAGGTTCAAGGATTAGGGTTAGGTTTACCTGATTTGAGAAGTAAGAAGAAAGGAAAGCAAAAAATGGCTCCAAAGGACTCGCATGTTTCGGAGGCTCTCAATAAGTTAAGAGAGCAGACAAGGGAGACGGTTAAGGGTGTGGAATCTATAGCCGGTTTGAAACCGGGCGGCGTTGATGGTTTGGAAAACGATGCAATGATGGAGGATTTGGTCAAACAATTTGAGCAACTTGCCGGGTCTAAGGTATACCTTATGATTCCTCCTAAACCTAGTTTAGGGTTTGTTTCAACTTTCAATCTTTTTGTAAGTATTACTCCCTCTGTCCTAAAAAGGAGTTACAACTTTGATTTTCAAAGGTCAAACTGGTACTTTCTAAATTCAAATTTGACATAGATNTCTTAATGATTCATCTTCCAACATATTACCAATCTAACATGTGTTCATATAATTCAATGTGGTTGTCAACCTTTTGTACAGTTATGCAATATCTTTTGGCAATTTGAAGTAANNAACGACCCATTGACAGAAATCAAATATGGATTTTCTTGGGACGCGGGAGTATTCTTTGCTAGTATTAATCGTCACTGATTGGCTATGCATTGTGATGAC | |||||||||
gi|211661764|gb|GE525237.1|GE525237 CCHS12309.b1_I05.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS12309, mRNA sequence ATTTGGGATAGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): ACCGTCTCACGGCGGTTCCGTCGCAATACATGGGAGGGTTTTGTATATAGAGAAATGGTCAAAACAACGTCGTTTTGGAGTGGTTGTATGTCACCGAAGAAAAAACCTTTTAATTATGCCTTCGGCTCTTACTTTGTTCTCTAATTTCAGGACACCAATACCTGCGGCACCTACTTGTGAAGTTCCTCCATGTTCAGCACAATAAGCAGCTGAAAGCCCTTCTAACTTTATAGGTAATCGAATTTTCTTCAGGGCTGATTTTGTAGTTACTTGTGGTGTAGAGGCTGCGTTCTATATATGCTCTGGACCTCCCTGCATTTTCTGTATATTTGACTTTTAGTAGTACGCCCTCTGTCCCAAAAAAGCGTCCACATTTTAATTTCTAAGTGTCAAATGAATTATGTTTCGTCTTTGAAATCGACAAGAAACATTTGAGTTTATGTAAAGAAGTCATAACTACATTTGGCGATGTCAAACAAATTAGATTGAGAACGTGAAAAAAATCATGTTAAATTTGAACTCGGAAAGTATTGAATATGGATTTCACCATCTAAAATCAAAACTGGACTCATTATTTGGGACAAAAGTAGGTCAATATAAGGTAACAACTCCCTCCGTCCC | |||||||||
gi|211664787|gb|GE526922.1|GE526922 CCHS13907.b1_E21.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS13907, mRNA sequence ATTTGGGATAGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): AAGGATGGGAGTCCCAAAACTTGTAAAATGAAATTTGGATCTTTGACCCCTTTTCTCTGAAGTCGCGTATTGCTCATGTGCGTAGACTTCAATTCCTAACAACAAAATTAAGAGCTTGTGTTTCGTAACTGGTTGATAATGGAGGCAATGGTGAAGAGATTTCAACAAAAGTTTAAAAGGGTGAAAAATGATATGGATCGATGGAATGAGCTCCAAGCTCAATTGGTTTTGCAGTTCAGAAATGCTTCCTCCATCATCGGAAGGTTACAGTTGCTAGAAGATCCCAAAAATTACGGTTCCTTGAAAAATCTTGGTGACGTTAAAGATGCTATCTTGACAAAGCAGATGGAATCCCTGCAAATTATTATGGTTTCAATGGCTAAAACTCTGGAGGAATTATATACTGTTGTCTTGTCACTTGGGAAAACGCTTTGGGATGCCAGGCAGCAAGTGAAGGGAGGCTCCGTGCAGCCCTCCATGAAACAACTGCAACAGCGGATTGGCATAATACCAAGGCTTGCCGACTGCTTGGAAGGGCTTCGGCTTCTTCACGAGATGCATCAATCTGAGTACCTGCTTAAGTCATCAATGGTGTCTGCACTTGCTGATCTTACCTTGAAGCCAAGTGCTAGTGATTTACATACTCTTCAGCAACTCTGGGTAGATCAACCAAATATCCCCAAAGACGAAGGTAAAAAATAAGTTTCATGAAGCATGTACTACAAAGTACTCCCTCTGTCTCAAAAAAGAGTCTGGGGTTGATTTTC | |||||||||
gi|211682673|gb|GE542776.1|GE542776 CCHS29099.b1_F04.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS29099, mRNA sequence ATTTGGGATAGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): CCACAAACGGGAGAAATTTTATTTGCAAAAAAATTGAGAACTACATTTAACTATATAAACATACTACCTCTGTCCCAAATTTGAAACATGTTGTGTATAACAAAATATTTGTGTTGAATTTCAGTATACTAGGTTTGACTTTTTAAAATCGATTTGAGACCCTTTTTTGGACGAAGGTAGTATTTATTATTTTTCTGTTCCTGGTTTGTGTATGTAATACACACAATAGGGGCACCACTAAAATACCATGTGTTAGTTTAGATTTTTTTTGTCTTTTAACTGTTTGTTCTTATGTCTGAATTGGTCTTAAAAGAGTTTGCTTGCCTTATGAAGATGATTCATACAAGAGTATTAGTCTAAATGATTAAATATTCATTAGCTTTTCAACATTTAATCATTTAGTTTTATCAAAATGCCCCTAATAATGCCTTCTCATCAATTTTAATTTGTTCGTAGATGGACAAAGGGAAAGGTGTGATGGGTAGTCGAAAATGGGCCGTTGATTTCACAGACAATTCATCCACACCTTCCTCTCGTGACATTCCCGACCCACCCGGCTTCACGCGCGCCTCTCACGTTCAGGATGATTCTACTCTGAGTCGCCCAAAGAAGGACGCCGAAAGCAACTGGAAGACCCAGAAAGCATGGGAAGTCGCCCAAGCCCCCCTTCAGAATCTACTTATGATGGGCTTTATGATGTGGATGGCTGGAACACAGTCCACTTTGTTAGCATAGTATAACATTTTCCGCTCTTGGCAGCCCTTAGTGCCCTTCAGGAGTGGGG | |||||||||
gi|211680482|gb|GE538041.1|GE538041 CCHS24471.b1_M22.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS24471, mRNA sequence ATTTGGGATAGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): GCTGAAGATCTCCGATCAGATTACCGAATTGATACATAGTCTGGTGCACCAGGTCACGAACAATTGCGTAGTGAACCAAAATGGCTACTACGGCATGCTTTATGATCCTTAGCAGAAATGACATTCCTATATATGAAGCTGAAGTTGGGACTGCTTCTAAAGTATGGTTTCATTTACCAAATCTATTCTCGATTTGATCAAATGATTTACTTTAAGCTAGATTATGCAAGAAAAAGTATTACTCCCTCTGTCCCAAAAAACGAAGCAATATTTACTTTTGAGTATCAAATGTGTAAGTTTTTTAATTTTAAAATTGACAAGTTTAAAAAAATTGATAACTACATTTAGGTGCGTAAAACTATTAGATTGGAAGCATGATGATGATGATGAAAAAATTAATGAAATCTATGTCAAATTTGGATTTGTGAAGTACAAGATTTGTCATTGTAAAATCAAAATTGAACTCTTTTTTTAGGACAAAGGCGAGTATTGCTTAACCTTTTGGCTTGCAACGAGATTGTGAAATACTCTCTCTATCCCATGAAAATTGTAACATTTTTTATTTTGAGATGTCCGTTAAACATTGTAATGCTNTTATTTTTGCAAAGATTCTATGCTAAATGACATGTCATCATTACCTATAANGTGACGTTATCCATTTGAGTGCATACATTTCATTATGTCTTTATTGAAGGGTAGTTTAGGAATTGGGTAAACACATTTNCTAACTATCCACCAGTCAACATTGCAACTTCATGGGACGGAGGAGTGGCGTTTTTACGTGCATAGCACATGGTCTCACTTGTGAAATTGATTCTTTATAGCTCTTCTACTGC | |||||||||
gi|211670429|gb|GE532625.1|GE532625 CCHS19313.b1_B05.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS19313, mRNA sequence ATTTGGGATAGAGGGAGTAAT EST sequence (targeted fragment marked with yellow): GAACCGGTAAATATCTCCAGCTAGGTAAATTAGGGGAATCGCAAATTTCTCACTCGCATCTTCCGCTCTTTCTTTGTACAATTGCTGGCTGCTAATCACTCCTACTTCAACAACGAATCAACCACATCGATTATATGTTACAGCTTCTGTGATACAGTGTACGAAATTCTTGCTTCTTTTTGATTTTGTTTTGTGACAATGTCTTCTGTCTTCTCTGATTTTTGCAATTCTGATTAAAATCATAGAGACATATTCATTCATAGAACACCTCTGTTTCGGGGATTTCTTCCATTGTACTCCCTCTGTCCCAAATAAAGCCAGATTTTTGAATGTCAAGTTAATTTCACATCGATTTTGTTACACTGTGTTTGGATTGAAGGGGGAGAGGGGGAGATTAACATGAAGGGTAACACTTCAACTCCGTTAGTCCTCCCTTCTCCTCATGTTATTAAATAGGCTGTTAGTATTTTGTGTCCTGAATGTCTATATTCAAAGATTCTTGATAAACTCCTTCAGAATTGCAATTTCCATTCTTGGATGTCTTTGAGAGCTTCAAACATTTATCTCTTGTGATCGGTGTTCGGTCTACACATA | |||||||||