| mature miRNA: GTAGCCAAGGATGACTTGCCA species: Barnadesia spinosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211665511|gb|GE525462.1|GE525462 CCHS12518.b1_K10.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS12518, mRNA sequence GTAGCCAAGGATGACTTGCCA EST sequence (targeted fragment marked with yellow): ATGGAGACAAGTCACAGTCAACGCAGATACACAATCGATCTACTATTTTCCTCTTGGTTGACTACATCTACTGCTACATTGATCATCAAGTTCTACAAACCATTGCGATCTCAACTTGCCTAGATGGGAGATGAGAGCCGAACGTATACTGTGGATGACGCACTTGCGGCTGCTGGCTTTGGGAAGTTCCAAATGCTCGTGCTTGGTTATGCAGGCATGGGCCAGATTTCCGAAGCCATGGAGATGATGCTTCTCTCATTCGTAGGACCAGCACTTCAGTCTGCGTGGAATCTATCTTCTCACGAAGAAAGCTTGATAACCAGCGTGGTTTTCGCTGGCATGCTGGTCGGAGCGTATACATGGGGCATCGTTTCAGATAAGCACGGAAGAAGGAAAGGTTTCCTAATTACTGCTATGGTTACGTCTGGAGCTGGTTTTCTTAGTGCTTTAGCTCCGAACTATGTTTCGCTGATCGTTCTCCGTTGTCTCGTCGGTGTTGGTCTCCGGAGTGGCCCTGTGCTCGCGTCTTGGTTTCTAGAGTACATACCTGCTCCAAGCCGCGGCACCTGGATGGTTGTGTTTTCAGGCTTTTGGACCATCGGAACTATCTTCGAGGCTTCTGTTGCATGGTATGGCATGTCATCCTTGGCTGGAGATGGCTACTCGCATCTCATCTCTTCCTTCGTCAGTGCTCTCGGGGTTTACGGTTCGTGCCTGAATCCCGCCGTACTTGGGTTGAACGAAAATA | |||||||||
gi|211682259|gb|GE540623.1|GE540623 CCHS27052.b1_H19.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS27052, mRNA sequence GTAGCCAAGGATGACTTGCCA EST sequence (targeted fragment marked with yellow): AGAGACCAAATCTTCGAGCTGGTGGTATAATCATCACATGCGAGCTGCTTCTCTTGCCATTTTTGAGCGAATCCCACTTGTAGATTTTGTTCTTGAAGTCAGAGATGCAAGGATTCCTCTGTCATCGGAATATGGACAACTGAGATACTTCCCATCTTCCTCAAGGAACATTGTTGTTCTGAACAAAATGGACCTTGCAAATCGCTCACAAATTAAGGAATGGCTGGCCTACTTTAAGGACCGAAATAACATACCTTACGCTATCAATTCCCATAACAAGGACAGCATCAAGGAGTTCCTGAACTTTCTACAAGCCAGAGTTAGAGATATGAGAAGGGTTACTGATTCGAGTCATGCTCACACTGCTACAGTAATGCTGGTCGGAATTCCGAACGTTGGCAAGTCCTCCTTGGCAAATTCGTTGCATCAGATCGGCAGAATTAGTGCTGCAGAGAAAGGGAAGTTAAAACATGCAACAGTGAGCCCATGGCCAGGGGAGACGAAAAATATTGTTAGCTTAAAGATTGCTAGCAATCCTAATATCTATGTCTTTGACACCCCTGGAATTTTGCCTCCCGAGCTTCCTGATGATGAACTTTGTTCCAAATTGGGGCTTACCGGAGCAATTGCTGACACTCTGATTGACGAATCAGAGCTTGCACAATACTTTCTATCTATACTCAATACCAGTAACGAATACGAGAAATGGCAAAGTTTTCACCCTGGAGACGACAGACATCACTCATCATC | |||||||||