| mature miRNA: TCTGTCGATTTCTCAATCGAA species: Barnadesia spinosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211692788|gb|GE549788.1|GE549788 CCHS8592.b1_P11.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS8592, mRNA sequence TCTGTCGATTTCTCAATCGAA EST sequence (targeted fragment marked with yellow): AATCAACACACTCCATCTCTCTCTTTCATCCGATTAAATCACTTCAATTAACAGCAACAGTTTCTGCTTTTCTCATTGTTGCTTCTCTGATGGAGATGGATACTTCAAACCCTGCTGTCTTCGTGAATGCTGACCTGCTACGCAGTTACGTTGGCCGGAGAGTACGCACTGTTATCCAGGTATTGCGTCCTGATGGTGGTGGTTTGGTTGGAAAATCGACTGATGAACAACAAATTGTTGTAAAGGGCCAGCCACCAGCTCCTCTTACTACATTTGTCGAGGTAATCGGTATTGCTGACAGCCCCCAATCCATCCGTGCAGAGATCATGACCAACTTCGGTGATACATTTGATACAAATAACTTCAACCAACTTTGTCAACTTGCGAACGGGGAGTTTAGGCATTTGTTTATCTGAAAGAGGCTCTATGATGAGAATATGCTACGAGTGACTTGAGGAAGTGTGGACTGCCTACACTGATAGTTCCAGTAGTGACAACGCATGTGAACTCAAACAGTACTGTTACCTTTTTCTGTTTATTCCGCGTTTGACGTTTCGAAATTGTAGGGTAGATATAAGTTGTCTGGTCATTCAGCTTGTAGTAATGCAAAGTGTAGTAGACCTCTTCACTATCTGAAATTCAATTCTATGGTTATCTT | |||||||||
gi|211662539|gb|GE528598.1|GE528598 CCHS15483.b1_F07.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS15483, mRNA sequence TCTGTCGATTTCTCAATCGAA EST sequence (targeted fragment marked with yellow): AATCAAATCAATCAACACACTCCATCTCTCTCTTTCATCCGATTAAATCACTTCAATTAACAGCAACAGGAGATGGATACTTCAAACCCTGCTGTCTTCGTGAATGCTGACCTGCTACGCAGTTACGTTGGCCGGAGAGTACGCACTGTTATCCAGGTATTACGTCCTGATGGTGGTGGTTTGGTTGGAAAATCGACTGATGAACAACAAATTGTTGTAAAGGGCCAGCCACCAGCTCCTCTTACTACATTTGTCGAGGTAATCGGTATTGCTGACAGCCCCCAATCCATCCGTGCAGAGATCATGACCAACTTCGGTGATACATTTGATACAAATAACTTCAACCAACTTTATCAACTTGCGAACGGGGAGTTTAGGCATTTGTTTATCTGAAAGAGGCTCTATGATGAGAATATGCTACGAGTGACTTGAGGAAGTGTGGACTGCCTACACTGATAGTTCCAGTAGTGACAACGCATGTGAACTCAAACAGTACTGTTACCTTTTTCTGTTTATTCCGCGTTTGACGTTTCGAAATTGTAGGGTAGATATAAGTTGTCTGGTCATTCAGCTTGTAGTAATGCAAAGTGTAGTAGACCTCTTCACTATTTGAAATTCAATTCTATGGTTATCTTATGAAAGCTTTTCCCTTTGTTTAA | |||||||||
gi|211674942|gb|GE536059.1|GE536059 CCHS22598.b1_L10.ab1 CCHS Espina Barnadesia spinosa cDNA clone CCHS22598, mRNA sequence TCTGTCGATTTCTCAATCGAA EST sequence (targeted fragment marked with yellow): AATATTCAGGTCGAAAAGTTCTTTGGGGCAACGTAGTTGCTCAGAAGTTGGATAGCTTGATGGTGCTGACTTTCGAACACCTTAAATCCTGTTACGAAAGCGGCCGCTTGGCCCAGTTTGTGATGTTCTATGCTTGTTCCCTTGACCCCGAAAACTGTGGGACACAATTTGTGAGTAGACTTATTGATATCTTTGAGAGCACCGCCTATCCCAAAGATTGGAGAATAAGTGCCTTGGCTTATCTTGCGAGTTACCTGTCTCGAGCTAAGTTTTTGTCAGCCTCGTACGTGACTACGATATTGGAAAGTTTGGTGGATTGGTGTCTTAAATATTGCGAAAGCCGGGGTGGTGAGATTGATCCCAAAAATCATCGAGTTTTTTATGCCGGATGCCAGGCCATTATGTATGTGCTTTGCTTTCGTATGAGATCGATTCTGGGCACTCCTCGACTCAAATCACAACTTTTCATCATGCCCATAGAGACAATTTTGAAGCATCCGCTGAATCCGTTAGAGGTGTGCTTACCTTCCATAGTCGAGGAATTCCTCCGTCAAGCCCAAGCCGCTCGTCTCTTTCACGTGTCGGGAGCCTTTGTATTCACAATCTCCTTGAATCGGATTTGTCTCGAGCTTTTGGTGGATCGGAAGGCTGGATTTGTTCTCCCGTTCGATCATATTTATTGAGAAATCGACAGTTTATCCGACCAACTCATATCTGGTGATGGGAGACACTTACACATATGTGCCGTGACATGATGAGAAAGAAG | |||||||||