| mature miRNA: ATACTCCCTCTGTCCCTAATT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270476700|gb|GT862524.1|GT862524 CCYP15001.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c ATACTCCCTCTGTCCCTAATT EST sequence (targeted fragment marked with yellow): ACCGCAAACACCTTCAAGATATATATCATGACGGATTTAATAAACTATTTTAGAGTTGTAGATGTTGGTTGATTTTTCTATGAACTTGGTCAAATTTTAAGAAATTTGACTTTAAGACGAAGCTAGAACATCTTATAATTTGGAACAGAGGGAGTGCATACATAATCTTTGTTTCCAAAAACTAGTGTCGTATATCTTGTCAGAGGTCCTATCGAGCTTTATGATGGTGTCTTTGTTTTTATTTAGGTCTTTGATTGCTGACTGGATCGATGAATTCGAGACCAGTAGTGCTCATCTTCCTCCTGCTCGTGCTCATCGTAACATCACAGTTTGAGTGGAAGCAGCAGATTGGTGAGGCCGAGGCGACCCCAGCTGCTGCGACACGACGGAGGCAACAAGCGCTGGTCGTAAGGGAAGATGCTATCAATGAGAAAATAATATTGGCGCAAGAGAAAAACATCCAGCAGCTCACCGAGCTTATCCAGAGCCTCCAGGTGCAGCTACTGCACTGCCGCGGCAGTAACAGTACTACTGCTCATAGCGCCTCCTCGAATCAGTCGTTGACCAAGGACAGCAAAGTGGAGGGACCGGACATGATGGATGATGATCATATGAATCGTCACCTGAATGATCGTCATCGTCAC | |||||||||
gi|270398724|gb|GT781756.1|GT781756 CCXF15394.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachy ATACTCCCTCTGTCCC-TAATT EST sequence (targeted fragment marked with yellow): GAACATGAACGAGATCATGCAGATACTGGCTGAGGCGACCATACCAGCCGCTGGCACCCGTGGAATCAACCAGTTCCTGACCGACAGCCTTGACCTTGATGACGACATGGAGGACCTGGACTCAGACCTTGATCTCGACATCGACAGCAGCGGAGAGATAGTGTATGCCATGTAATCTGTAAATATTTGTGCCCAGGCAGTAGCTGCCGTCTTCCACCTTTTGATTCTAAAGTCATGTTGCTGCTGATTGTGTAATATGGTTATGTTGCTGCTTCATGAGCAGGATTGTGAAGTATTCCCTCCGTTCCATAATTCTTGTCTCAAATTTGCCTAAAAATGGATGTATCTACTCCTAAAAAGCGTCTAGATACATGTAATATTTTGAGGAGAATTATGGAACAGAGGGAGTATTATGATAAAGGGGAGTATTTCCTGGGATG | |||||||||
gi|270414909|gb|GT796659.1|GT796659 CCXG8158.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG81 ATACTCCCTCTGTCCCTAATT EST sequence (targeted fragment marked with yellow): GAAGGCACCAACAACACCAACAACATCTCAAAGGAAAACAAAGTAGTAGAAGAATTAATAAGTGATAGCTTTGTTACAAGTCAAAATTTCACTGTTTTACGGGCCATATATAGCTTACTGTTTTTGAGTTTTCGATCGATTTTTCTGACCACGAGACCCTCGGCACACAATTTTGTGCCTTCTTTCACCGGTTGATAAAAATCACCGATTTGACCCCGGTGCACGAAGCCGTTTTTTGGACGCTCGACAAAAATCACCTTTTGGCCGTTTTTGTGGGCCCAAGTTTTTTTGTTCTTCGGTCGATTTGCCGATGTCATGACCCCAGTATATGGTTTCGGATCGGTTATGGCCTTTCTCGTGGACTATAGCCCATTTTGGGTTTTTGGCTGATTTTTTTATATCGTCATACCCGGTATATGGTTTCAAGCTGTTTTTGTCATGTTAACAAAAATTATCGCTTGCCCATTTTCGTGACCTATAGGCCCCTGTTTTTGGGTTTTCGGTGGATTTTACAATATAGTGACCCTCAGTACACATTTTGGGTCATTTTAGGCCGGTCACAGTTTTTAGAAATACTATACTCCCTCCTTTCCAAAATAAGTGATGTGGATTTGTATAGATTCTTATGCAAATTCACGCCACTTATTTCTGGACAGAGGGAGTATGAATTGGGCCAAGAAATACTATGTCACTTTAGTACTCCAATAAGATCGATGCAGTGGAGAGTAAATAAGAAATTGGATCTCCCGATCTTCGATCGACGGACGCATGGCGGGGCGGGTG | |||||||||
gi|270447509|gb|GT832516.1|GT832516 CCYO14241.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD ATACTCCCTCTGTCCCTAATT EST sequence (targeted fragment marked with yellow): AAATATGGATGCATCTATGACTAAAAAGCGTCTAGATACATGTAATATAAAATCACTTAATATGGGACAGAGGGAGTATTTCATTGTGCCGTGCTCTGGAAGGAAGTCTGGAGACAGCAGTATTTTTTATGGGGGCTAAGGTCTACCATGTGGCATATGTATTGCAGATTGATGAACATTCAGATTGGTGAAGCATCGAGACGCACATGGCTTGGAGAGGAAGCTGATCCACAGTACTCGGATCGATTGCTGAGGGCATACAACAGACCAATCGAGGTGGCTAATACTGTGGGTGAACAAGAGTCAAGGTGGTTTATATCCAAGGATGCAGTCGTGTCTGGCCTTGGTCTTCTTGGCATCAAGCAGGGTGGACCTGAGGCACAGCTATCAAAGCCCCGGCGAAAGAGAGTTGTCCGAAAGAAAGTCGCCTCAGGTTGAAAGTAGTGGATTTGCTTGCAATGCTGGAACAATTTTGCTTCAGTTCCACTATGCCGTGCTGAGTTCAGCCAATGTCAAGTGGTAGTAATGAGGAAAAGTCACCATCGGGAATCAGCGCACGATCTAATCGGGGAAGGCATCAAAGGGGGGGAAGGTTGAGAGCTTTAGGTCCTCCACCATTTTGTATGTTTTCTTAATATCTGATAATAATCTGACATCTCAAGTTATTGCACTCTTGTGAGCCAAATAGGCACGTTTGGTGGTAGTCTCGGGGATTGATAAAGATACTGTCAGTATATGAGAAAGTACATTGCATTTTTTGAATC | |||||||||
gi|270383940|gb|GT765898.1|GT765898 CCXF5647.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo ATACTCCCTCTGTCCC-TAATT EST sequence (targeted fragment marked with yellow): CTCCCAGTTGACCTCATGGATGGTAGCACAGTGAGCAATCAGTATGAGGAGCCTGACCAGCCGATACAGAACATGAACGAGATCATGCAGATACTGGCTGAGGCGACCATACCAGCCGCTGGCACCCGTGGAATCAACCAGTTCCTGACCGACAGCCTTGACCTTGATGACGACATGGAGGACCTGGACTCAGACCTTGATCTCGACATCGACAGCAGCGGAGAGATAGTGTATGCCATGTAATCTGTAAATATTTGTGCCCAGGCAGTAGCTGCCGTCTTCCACCTTTTGATTCTAAAGTCATGTTGCTGCTGATTGTGTAATATGGTTATGTTGCTGCTTCATGAGCAGGATTGTGAAGTATTCCCTCCGTTCCATAATTCTTGTCTCAAATTTGCCTAAAAATGGATGTATCTACTCCTAAAAAGCGTCTAGATACATGTAATATTTTGAGGAGAATTATGGAACAGAGGGAGTATTATGATAAAGGGGAGTATTTCCTGGGATTGCCTGGCTGTTTAGAACAATATTGTATTGTATATGTATCCTGTACATGAAAATGTGACTTGTGC | |||||||||
gi|270441342|gb|GT822920.1|GT822920 CCYO7253.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN ATACTCCCTCTGTCCCTAATT EST sequence (targeted fragment marked with yellow): GCTCAGCAGCAGCAGTTGCTGCAGACTGGGAAATTTCAATGCTGGACCGGGGCATTCGTGTTTCAATACAATCAACAATGGAAATACATCTGTGATGCCAGATATTTCAATTCAAGTAATCAACCTCAGCATCCTGTGGCTGTGATGAGTAATTCCAAGAAAGAGGAAACTAAAGCTTTTGATTTTGTCTCGGATCACCTTGCTGCAGCACGTGGTTCAAAGAAGTAACCCCAAAGCAATGACGGAGCTGATAGGCCTCACCTAAACTGCGCAAGACCAGAACTGCTGGGCATCACATAAATGGCCAAATGGCCGAATCTCGTCACAGCTTCACTGCTGCATGAATCACACGTCTGGTTTCTCATGGTTTGCTTCAGCAAACGTTTCAAGGATTGCAGAAAGTTCTCAGACGGGATGTCATGTTGTATTATGTATTTAGACAAAGGGCGATTTTACTTTAAATAAGTATTGCTTCCGACTTCTTTTTTGTTTCTCCTCAGAGAGTTAGACAATGTACTCCCTCCGATCCTAAATTGTTGACAAAATATTACATGTATTTACACGGTTTTTAAGAATAGATACATCCATATTTAGGCAAATTTGAGTCCAAGTATTTAGGATTAGAGGGAGTATGTTGCAATATGCAGCTGGACTTCTTTTTTGTTACTTGCACAACTACATGTTGGTTTTTGATTGGAATTGTAAAGTTTGTTAAGCAATAAAAGGTGCAATGCTTCCGAGGATAATTCGTCCTGAC | |||||||||
gi|270376544|gb|GT758530.1|GT758530 CCXF1256.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo ATACTCCCTCTGTCCCTAATT EST sequence (targeted fragment marked with yellow): CCCGCATGATCCCCTCCATTCCCCGCCCTGCACCGGCGCCGGCGATGCATATGCCGCAGTCTGCACCGGTGAATGTGCCGGCAGCGAGGCTGCGTCGACCGCCGGTGGTGGATGAGTTCACTGCTGAAGCGGATGACGACGATGACGAGGAGATGCTGCCGCCGCACGAAATGGTGGCGCGCTCTCGGGCGCGGGAGTCGCCCATGACGACGTTTTCGGTGTTGGAGGGCGCTGGACGCACGCTCAAGGGCAGGGACCTCCGCCAGGTACGCAATGTCGTGTGGCGCAAGACCGGCCTTCTCGATTGACCCTGGTGCTTGGGCATCAGAAGTTCAGATAGACTCCTGTGATTGAGTATGCAGATTGTTCTGTACATTACGAATGATTGGGTGTTAAATTTTATCTGCACCTCTAAAACTTGTCTGTTCAATTAGACTATTACTCATCATATCATACTCCCTCCGATCCTAAATTGTTGTTGAAGTATTACATGTATCTAGACGCTTTTTAAGAATAAATACATCCATATTTGGACAGATTTAAGTCAAGAATTTAGGATCAGAGGGAGTATTATTTGTAATCTCTCTGTCCGAGCTGTTAAGTATGAGACATTGAACTATT | |||||||||
gi|78016106|gb|DV484493.1|DV484493 5361_E04_J07Z_024 Brachypodium distachyon leaf EST library Brachypodium distachyon cDNA clone ATACTCCCTCTGTCCCTAATT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTGAGAGTCTATGTGCTTGCGTTCTCAAAGCAAGATATTATCTGGATGGTAATCTGATAGACACGGTGTTCACAGGTAACCCTTCATCCTCTTGGAGAGCTATTGAGTATGGCCTCGAATTGTTTTAAAAGGGGTTGATATGGAGAATTGGTGATGGTAACTCTATCAGAATTTGGAGGGATCCTTGGATCCCCAGAGAAACAAGCGACAGGCCAATTACCCGCAAGGGGACTTGTAGAATCAACTGGGTTGCTGACCTGCTAGATCAAAATGGTTTGTGGAACACAGATTTAGTCCGACGAACTTTCCTCCCTGTTGATGCTAAGGAAATCCTTAAGATTAAAACCCCAGGGAGAAGGTTGATGGATAGACTGGCTTGGCAACCTGAAAAGTCAGGCTGTTTCACGGTAAAAAGTGCTTATTAACTTGGGCTACGTGATCAGATGAATGATGATGATGTTGGTGCAACCAGTGCAATTCCAGATGGCAGATGGCCGGCCTGGGACATGATCTGGAAAACTCCAGTCCCTAAGAAGGTACTCCCTCCTATCCATATTACTTGTTGAAATATTACATGTAGCTAGACACTTTTTAAACATAGACACATTCATATTTGGACTAATTTGAGACAAGTAATAGGGGTCAGAGGGAGTACATACATTTGCT | |||||||||
gi|270381121|gb|GT762310.1|GT762310 CCXF3614.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo ATACTCCCTCTGTCCCTAATT EST sequence (targeted fragment marked with yellow): CAGATGGCCACTCTTTGGAGTGGCAAGTCACATATTCATTGCATAGTTGTTCTATTGATACAAAAATAATCTTTTGACTCTTTGGGCAGTTTGACTAGATGTCACAGCTTTGAATACGTTGTTGCCTTGTTCTATTTGCTGCACAACATATACTCCTTCCGTCTCATATTAAGTGACTCAAATTTGCCCAAATATGAATGTATCTATACAAAAAATAAACATCTAGATACATGTAATATTTTATCACTTAATATGGGACAGAGGGAGTACATAGATAGTCCCACCCTGTTGACCCTCCTGCTCCAACCAAGCAAACGCTGTATACCAAGGAGACCGTCATGTCTCAAACCCAGCACCCGTCCATC | |||||||||
gi|270454865|gb|GT837276.1|GT837276 CCYO17266.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD ATACTCCCTCTGTCCCTAATT EST sequence (targeted fragment marked with yellow): AGAAATGGATTACCACCAGCTGTTTTATGTTTTTTGCTTCCATTGTCTTGATAGCAGTTAACTGTGCACTTAATAGATAATTAGAGGATCGGTGCCTGAGTGTTTACATGTGCTGGAGCAGTACCTGCCAATTCCTGTGCCGGTTATCGTTATGAAACGTGTATCTGTTATCCTAAGTAGAAAGTACTACAGATTAACAAGAGGGCCGATGGGCTTAAATTACATCTCATCTGTTTATTTTATTCGATATTGTCCACATATACATGGTTTTGTAGGTGTTGTGTTGCAAGTTATGTCCTGTGTTTGTCAGTATGCAGTATGATTTTATAGGAAAATATATTATGGAAGTCTTTCACAAGGAAAATTGAATGCCAAAATTTAATGTTGTGATGTTGTCAGTCTATATGCTGAATGCTCTCACATATACTAACGATCAAATATTTGAAGGTTGATTGCATGGATCCCATGGTCACCTATTAGCATTACTGTATTAGAGACAGAGGGAGTACAAGTTTCTTCATTTTGATGGCTTTCTGATTCAAGTTGGTTTAGCTTACTTGTAGTTTACTCGGATGCTCTATAGTCTTGATGCTCTTTCCAATGGATTTCGATCTAAGTTTATTTTTTGTAGTTTAGGACATAACTGCTTTGGTTGTATTAAGACACATATCTTCTGATGATTTTTCCTTCTACAACTCAATTAATTACGAGCAACGAGTATGTTCTTTCTTTTATATGGTGTTCATGTTGTTTCCTTGTACTGTTGCGGAGCTAATGTATTTGCGGT | |||||||||