| mature miRNA: GTACTCCCTCTGTCCCATATT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270468705|gb|GT851285.1|GT851285 CCYP8379.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): GTCGCCGCCGAGGTGGTCTACGACCCCAAGGACATGAAGGGCGACCCGACGGCGGGTTCCAGGTCCTCGCCGCTACATCGGCGTCTTCGGCAAGCCGCAGAACACCAAACCCGAGAAGATCGCCATGACGTCCCCGGTCATCACCTCTGCCTCCTCCGGACCCGGAAAGGCAGAGGAGATCTCCATGACGGCGCCCGTGATCACATCTTCGGTCGAGCCCGAGCCGGTGGCGATGACGGCGCCGGTGATCACGGCCGATGGGGGGAATAATAACAAGGTGACGATGCAGTTCCTGCTGCCGTCCAAGTACAGCAAGGCGGAGGAGGCGCCGAAGCCGACGGACGAGCGCGTGGTGCTAAGGGATGTCGGGGAGAGGGAGTACGGGGTGGTGACGTTCAGCGGGCTGGCGGGGGAGAAGGTGGTGGCGGAGAAGGCGGAAGGGCTCAAGGCCGCGCTGGAGAAGGACGGGCACGTCGTGAAGGGCCCCTTCGTGCTGTCACGCTACAACCCGCCCTGGACTCTCCCGCCGCTGCGCACCAACGAGGTCATGATCCCCGTCGAGTAGTGAATCGGTCCGGACTCCGGCCACTTCTTGCAACCGTGTTCGTACGTACGCGCTTCTGTCGTTGTCGTTTCAGTGACAAGGGGTCCCAGGGAGCCGGTGTGCTGCTTTTTCATTAGCCGTTAAGCTGATCATGTTAATGATCTTGTGTAATAGACATGTGTTTGGTTGGTGCAATAAATATTGGAGTGATGTTCTG | |||||||||
gi|270479938|gb|GT861853.1|GT861853 CCYP14619.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): CGGTCCCGAGTCCCAATGGCTTTCGATTTTGGGGTTCCACTTCCTCGTACCAGCCGACCGCTCGTGCGAGGATCCGAGCAGCCGGCAACGACGGTGGTGAGGAGCCGCTTGCCGAGGGCTAATTCAGCAAGGCCTAATTATCGATTCGCACGAGCTAGATGTCAGATCGTCAAACTCTAAGGCAACAACAACGTGTATTTGCCATTATCTATCACTTTGCCGAAGCATTAGTCTTCGAAGTGGTCAATGATGCCGGCAGCTATGGGGTTGGGACTTTATGCGTGTCATTGTCAAGCCAACTATCTCGATAGTACAAGTCGTCATACAAGTCAAGCTTTGTAAAGTGAAGATATTAAGGGATTGGTGCTATCAAGACTCAGGAGTCGAAGGGGCCAAAAGTGCGAAAGGAAAAGAAAATACTTCCTCCGTCCCATATTAAATAACGAAATATTACATATATTTAGACGTTTTCTGGGTATAGATACATCCATATTTTGTCAAATTTGAGTCACTTAATATGGAACAGAAGGAGTACTAAATATTGTACAACATCACAAGCATCCGGGGAGGAGCTCCACTTAAAACTTGTGCATGATATGTGTCTGGTACACATAGGGCTTGTTTGGTAGGCTGCACCACCCTAGCATGGCCTTCCTCCCTAAGCCATGCATGCCGACCCTAGACTTTTTTTTTTTACCAACATGCCGACCCTAGACGTGCTGAGTACAGACAACTGCAGAGTGTGTTTGATAGCCTTG | |||||||||
gi|270447509|gb|GT832516.1|GT832516 CCYO14241.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): AAATATGGATGCATCTATGACTAAAAAGCGTCTAGATACATGTAATATAAAATCACTTAATATGGGACAGAGGGAGTATTTCATTGTGCCGTGCTCTGGAAGGAAGTCTGGAGACAGCAGTATTTTTTATGGGGGCTAAGGTCTACCATGTGGCATATGTATTGCAGATTGATGAACATTCAGATTGGTGAAGCATCGAGACGCACATGGCTTGGAGAGGAAGCTGATCCACAGTACTCGGATCGATTGCTGAGGGCATACAACAGACCAATCGAGGTGGCTAATACTGTGGGTGAACAAGAGTCAAGGTGGTTTATATCCAAGGATGCAGTCGTGTCTGGCCTTGGTCTTCTTGGCATCAAGCAGGGTGGACCTGAGGCACAGCTATCAAAGCCCCGGCGAAAGAGAGTTGTCCGAAAGAAAGTCGCCTCAGGTTGAAAGTAGTGGATTTGCTTGCAATGCTGGAACAATTTTGCTTCAGTTCCACTATGCCGTGCTGAGTTCAGCCAATGTCAAGTGGTAGTAATGAGGAAAAGTCACCATCGGGAATCAGCGCACGATCTAATCGGGGAAGGCATCAAAGGGGGGGAAGGTTGAGAGCTTTAGGTCCTCCACCATTTTGTATGTTTTCTTAATATCTGATAATAATCTGACATCTCAAGTTATTGCACTCTTGTGAGCCAAATAGGCACGTTTGGTGGTAGTCTCGGGGATTGATAAAGATACTGTCAGTATATGAGAAAGTACATTGCATTTTTTGAATC | |||||||||
gi|78016106|gb|DV484493.1|DV484493 5361_E04_J07Z_024 Brachypodium distachyon leaf EST library Brachypodium distachyon cDNA clone GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTGAGAGTCTATGTGCTTGCGTTCTCAAAGCAAGATATTATCTGGATGGTAATCTGATAGACACGGTGTTCACAGGTAACCCTTCATCCTCTTGGAGAGCTATTGAGTATGGCCTCGAATTGTTTTAAAAGGGGTTGATATGGAGAATTGGTGATGGTAACTCTATCAGAATTTGGAGGGATCCTTGGATCCCCAGAGAAACAAGCGACAGGCCAATTACCCGCAAGGGGACTTGTAGAATCAACTGGGTTGCTGACCTGCTAGATCAAAATGGTTTGTGGAACACAGATTTAGTCCGACGAACTTTCCTCCCTGTTGATGCTAAGGAAATCCTTAAGATTAAAACCCCAGGGAGAAGGTTGATGGATAGACTGGCTTGGCAACCTGAAAAGTCAGGCTGTTTCACGGTAAAAAGTGCTTATTAACTTGGGCTACGTGATCAGATGAATGATGATGATGTTGGTGCAACCAGTGCAATTCCAGATGGCAGATGGCCGGCCTGGGACATGATCTGGAAAACTCCAGTCCCTAAGAAGGTACTCCCTCCTATCCATATTACTTGTTGAAATATTACATGTAGCTAGACACTTTTTAAACATAGACACATTCATATTTGGACTAATTTGAGACAAGTAATAGGGGTCAGAGGGAGTACATACATTTGCT | |||||||||
gi|270476700|gb|GT862524.1|GT862524 CCYP15001.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): ACCGCAAACACCTTCAAGATATATATCATGACGGATTTAATAAACTATTTTAGAGTTGTAGATGTTGGTTGATTTTTCTATGAACTTGGTCAAATTTTAAGAAATTTGACTTTAAGACGAAGCTAGAACATCTTATAATTTGGAACAGAGGGAGTGCATACATAATCTTTGTTTCCAAAAACTAGTGTCGTATATCTTGTCAGAGGTCCTATCGAGCTTTATGATGGTGTCTTTGTTTTTATTTAGGTCTTTGATTGCTGACTGGATCGATGAATTCGAGACCAGTAGTGCTCATCTTCCTCCTGCTCGTGCTCATCGTAACATCACAGTTTGAGTGGAAGCAGCAGATTGGTGAGGCCGAGGCGACCCCAGCTGCTGCGACACGACGGAGGCAACAAGCGCTGGTCGTAAGGGAAGATGCTATCAATGAGAAAATAATATTGGCGCAAGAGAAAAACATCCAGCAGCTCACCGAGCTTATCCAGAGCCTCCAGGTGCAGCTACTGCACTGCCGCGGCAGTAACAGTACTACTGCTCATAGCGCCTCCTCGAATCAGTCGTTGACCAAGGACAGCAAAGTGGAGGGACCGGACATGATGGATGATGATCATATGAATCGTCACCTGAATGATCGTCATCGTCAC | |||||||||
gi|270452658|gb|GT833825.1|GT833825 CCYO14983.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): GATCAAGGTGAGATTGATTTCAAGGAGGAAGCAAAGTTTTCACAGCACTTGAAGGAAAAAGCAGAAGCTGTCAGTGAATTTGCAAAATCGAAATCTCTTGCTCAACAAAGACAATATCTTCCCATATACACTGTCCGAGATGACCTGCTACAGGTTGTGCGTGAAAATCAAGTTGTTGTGGTTGTTGGCGAAACTGGTTCTGGCAAGACCACTCAACTGACTCAGTATCTGCATGAGGATGGATATACCACAACTGGTGTTGTTGGCTGTACTCAACCAAGACGTGTGGCTGCCATGAGTGTTGCCAAGCGGGTCAGTGAAGAAATGGAAACTGAGCTTGGTGATAAGGTCGGATATGCTATTCGATTTGAGGATGTTACTTGTGCTAAGACTATAATCAAGTATATGACAGATGGAGTACTTCTCCGTGAAACCTTGAAAGATGCCGACCTTGACAAATATCGTGTTATCGTCATGGATGAAGCACACGAGAGATCCCTCAATACTGATGTTTTATTTGGTATATTAAAGAAGGTTGTTGCACGTCGACGGGATTTTAAGCTAATCGTCACATCGGCAACCCTAAATGCAGACAAGTTCTCAAAATTCTTTGGAGGTGTACCTGTATTTTACATTCCTGGCAGGACATTTCCTGTTAATATCTTGTTCAGCAAAACACCATGTGAAGACTATGTGGAAGCGGCAGTGAAGCAGCTATGACAATCCACATAACAAGTGGCCCTGGTGACATCCTCATTTTCATGACTGGGCAGGAAGAAATTGAAGC | |||||||||
gi|78021007|gb|DV489394.1|DV489394 5653_C09_F17Z_075 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clone GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): TGATATGGATCAGAGGGAGTACCATAATTCTCTCAAATCATCAATTTCCTTTTCAATTATCTGCTCCTATAAAAGACTCGATTAGTGGCGGCAGTCCGTCACCTTTGGACCACGTCACCTTTTTTTTCATCACTTGTTATTTTTGGCATGAATTAAAGAAATGAGAACAAATAATGATTAAATGATCTAAGAAGTACTCCCTCTGTTCCATAAAGATTGGCACGGATTTGAATTAGCTCTAGTTCAAATTCGTGCCAATCTTTATGAAACGGAGGGAGTATGTCATTATCTTTAAACATTCTTTTTAGTCGGCAGCAATGCAAGCGTATTGGGCTAGTACACCTAAAGCCAAAAGAGAAGCAGTGGTTATTATGACTAATGCGTAGCTGTTAAAATAAATCTTGCAGGTAACCGTTGAAGAGAAGTCTTACCACAAGTCCTGCTTCAAATGCTCTCACGGAGGCTGCGCCCTTTCGCCGTCCAATTACGCAGCGTTGGAAGGCATCCTCTACTGCAAGCACCATTTCTCCCAGCTTTTCAAGGAGAAGGGCAGCTACAACCATCTAATCAAGTGCGCTTCGGTCAAGCGCGCAGAGGCACAAACAAAAGCACAGCCGGCTACCGATTCCTCCTGATTGTGCCATGTCTCCAGAGTGGGTTTTGAGGGCGAAAGTCTGGAAACCCTGCCCTTTCACTTGTACCCGCTGTGTGCTATGTCCTAGCTCTGGGGGTACTGTGTGCTATGTTCTAGCT | |||||||||
gi|270454817|gb|GT837228.1|GT837228 CCYO17239.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): ATGGGCGAACTACTCAGTTTGTTTTAGTAAGTTCTGGGGGTGTAAATGTGCCATTTAACACACAGGGAATATCGGAGCCACAAAATGAGGATAATGATGTTAGGCTACGTGATCTAATCGTATTGGTCATGAGGACTTTCCAGAACAAGGCATTAGATGCTAAAAGGAAAGGCAAGGCTTAGATGTGTAAAAAAAAAGAGTGATTCTCGTCTAGAAGAATTTTGCTCATTATTTTGTGCAGTGTTCATTGTTTGCCTCGAGGTGAAAGATTGTCCCAAGCATTCTAAGATTTATCTAGAGGCATGGAGCTACAGAAAAGGGTTGGGTAGTCTTGTAGGTTAACTTGTGTATAAATACAATAATTTTCTGTAGCTTCTTTTTTTTCCTTCTTCCCATTTTTCTCTCCTTCACATTCGTTTTATCTCTCGATTGCCCCCTCTAGGTTATTAGTCACAGGAATTGTACTTGTTGGTAAAATTTGAGCAAAAGCCAATTAATGTAATGAATTGCTGCTGTGTTATATGGTAGAGATTAGTTTACTAGTAACAGCTGCTGATATTGTCTGTCTAGCCATTCCATGCCGTAATACTCCTTTTGATCCATATTATTTGTCTCAAATTTACCCAAATATGATGTATGCAAGCCTAAAAAGTGTCTAGATACATGTAATATTTCGACTACTAATATGGATCAGAGGGAGTAGTTTTTTTAATGAAATATGTGTATTGC | |||||||||
gi|270381121|gb|GT762310.1|GT762310 CCXF3614.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): CAGATGGCCACTCTTTGGAGTGGCAAGTCACATATTCATTGCATAGTTGTTCTATTGATACAAAAATAATCTTTTGACTCTTTGGGCAGTTTGACTAGATGTCACAGCTTTGAATACGTTGTTGCCTTGTTCTATTTGCTGCACAACATATACTCCTTCCGTCTCATATTAAGTGACTCAAATTTGCCCAAATATGAATGTATCTATACAAAAAATAAACATCTAGATACATGTAATATTTTATCACTTAATATGGGACAGAGGGAGTACATAGATAGTCCCACCCTGTTGACCCTCCTGCTCCAACCAAGCAAACGCTGTATACCAAGGAGACCGTCATGTCTCAAACCCAGCACCCGTCCATC | |||||||||
gi|270398724|gb|GT781756.1|GT781756 CCXF15394.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachy GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): GAACATGAACGAGATCATGCAGATACTGGCTGAGGCGACCATACCAGCCGCTGGCACCCGTGGAATCAACCAGTTCCTGACCGACAGCCTTGACCTTGATGACGACATGGAGGACCTGGACTCAGACCTTGATCTCGACATCGACAGCAGCGGAGAGATAGTGTATGCCATGTAATCTGTAAATATTTGTGCCCAGGCAGTAGCTGCCGTCTTCCACCTTTTGATTCTAAAGTCATGTTGCTGCTGATTGTGTAATATGGTTATGTTGCTGCTTCATGAGCAGGATTGTGAAGTATTCCCTCCGTTCCATAATTCTTGTCTCAAATTTGCCTAAAAATGGATGTATCTACTCCTAAAAAGCGTCTAGATACATGTAATATTTTGAGGAGAATTATGGAACAGAGGGAGTATTATGATAAAGGGGAGTATTTCCTGGGATG | |||||||||
gi|270383940|gb|GT765898.1|GT765898 CCXF5647.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo GTACTCCCTCTGTCCCATATT EST sequence (targeted fragment marked with yellow): CTCCCAGTTGACCTCATGGATGGTAGCACAGTGAGCAATCAGTATGAGGAGCCTGACCAGCCGATACAGAACATGAACGAGATCATGCAGATACTGGCTGAGGCGACCATACCAGCCGCTGGCACCCGTGGAATCAACCAGTTCCTGACCGACAGCCTTGACCTTGATGACGACATGGAGGACCTGGACTCAGACCTTGATCTCGACATCGACAGCAGCGGAGAGATAGTGTATGCCATGTAATCTGTAAATATTTGTGCCCAGGCAGTAGCTGCCGTCTTCCACCTTTTGATTCTAAAGTCATGTTGCTGCTGATTGTGTAATATGGTTATGTTGCTGCTTCATGAGCAGGATTGTGAAGTATTCCCTCCGTTCCATAATTCTTGTCTCAAATTTGCCTAAAAATGGATGTATCTACTCCTAAAAAGCGTCTAGATACATGTAATATTTTGAGGAGAATTATGGAACAGAGGGAGTATTATGATAAAGGGGAGTATTTCCTGGGATTGCCTGGCTGTTTAGAACAATATTGTATTGTATATGTATCCTGTACATGAAAATGTGACTTGTGC | |||||||||