| mature miRNA: TAGCCAAGGATGACTTGCCAG species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270401737|gb|GT788168.1|GT788168 CCXG3552.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG35 TAGCCAAGGATGACTTGCCAG EST sequence (targeted fragment marked with yellow): AAGAGCACGCACATGAACTCGGATTATGATATTGCCTCAGTCTCCGGAGTGTGCGCCATGAACTCGGATCTGCTACACATGCCCAGAATGTTCGTGCTCTCCATCGTCTCCTGCCATTCTTTCCTCTTCCCCAAAGCCCCAAGCCTCCAACCGTGCCTCGCCCTAGTGCTGCCGCCGTGCCGTAGCCTAGCGTCATCGCCGACGCCTCTCACGCGCTTCGCCGCCGTCACCATTCCCGATCTATCTCATCCCGTCCCTGCTGTGTGTCTGCGTCCCTTCCGCAGTTTGGGACATTGCTTGTTGACTTTTAAGCTCGGCCATGTGTTTGCCGGACATGAAGACTCCGGCTGGGGCTGGCGGAATCCGGTGGTGGCTCTCCACCGTAGTGGTGTTGACGCTGGCGCTGGTGATGGCTCTAGTGGTGATATCTCTGTCAGTGGACTCGTCTTTGCCTGGGGCATCCTTACATGAATGTCTCACTTTCAGAGCTAAACACCCAATGGGGAATGATAGTGCCATTGGCGTTCCATTACCAGGGGAAGATTTGCAGAGTGGCAAGCAATCCTTGGCTGAGCACTGTGCTCAAAGTGGTACCCTGAATTCGAGTGTGGCATCTTTGAATACTAGAGAAGTTGGATCACATAGTACCGGGATCCAGCCGATGTTGGTAACAAAGTACCGGATCCAG | |||||||||
gi|270400693|gb|GT783086.1|GT783086 CCXF9695.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo TAGCCAAGGATGACTTGCCAG EST sequence (targeted fragment marked with yellow): ATGTAAATGCTAAGCAGTATCATGGAATTTTAAGACGGAGGCAGTCACGTGCAAAGGCAGAACTTGAGAGAAAGGCGATTAAAGCGAGGAAGCCTTATCTTCATGAGTCGCGTCATCAACATGCAATGCGAAGGGCAAGAGGAACTGGGGGACGCTTCCTGAACACAAAGAAGAACGAAAACGGTGCTTCAAAAGAGAGAGCTGAACCGAACAAAGGCGACCAGAACTCGGAGTATCACCGTGTACCCCCTGACTTACAGCTCCGTCAGGCATGAAGCAGCAGTTTGCAAACCTAGAACAGTGGCTTCTGTCCACCGGCGTACAAGCACCCCCAGGGTGGATTTCTAACTCCAGCTTCGTGCTGCCATCTTCGCGACGCATATTCTCTGCGCAAAGCGCTCGGTATTTGGGTCCTTGGCAGAAATGCTGTCTGGTTCCGCGAGTCCATCCATCCCGGTGTCGTTGCCATGCGCAGCTCTGCTGTTTTCAGGCAATTCATTCTTGGCTTTCCATTCCGCCCCTTGTTTGTCTATGGTCGTTAGTAAAACTGGCCTGTGCTGGGTCCTCAGGGTCCTGCAGCCGCGTGTAAGATTAATTAGCTTGGGATAGTGCTCGTTTGTACTGCAGTAGAGTGACTGGAGTGTGGCTTGTATTCCTAGTTTGACGTGTAACAAATGCAAGTGCAGAGATCAACTCATATGCAGAGAGATAAGAACATTTTAAACTG | |||||||||
gi|270472074|gb|GT853518.1|GT853518 CCYP9542.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TAGCCAAGGATGACTTGCCAG EST sequence (targeted fragment marked with yellow): ATGCCATTGCCTCTTGAAATATCGGAGGAAACCTGTCTATGTAAATGCTAAGCAGTATCATGGAATTTTAAGACGGAGGCAGTCACGCGCAAAGGCAGAACTTGAGAGAAAGGCGATTAAAGCGAGGAAGCCTTATCTTCATGAGTCGCGTCATCAACATGCAATGCGAAGGGCAAGAGGAACTGGGGGACGCTTCCTGAACACAAAGAAGAACGAAAACGGTGCTTCAAAAGAGAGAGCTGAACCGAACAAAGGCGACCAGAACTCGGAGTATCACCGTGTACCTCCTGACTTACAGCTCCGTCAGGCATGAAGCAGCAGTTTGCAAACCTAGAACAGTGGCTTCTGTCCACCGGCGTACAAGCATCCCCAGGGTGGATTTCTAACTCCAGCTTCGTGCTGCCATCTTCGCGACGCATATTCTCTGCGCAAAGCGCCCGGTATTTGGGTCCTTGGCAGAAATGCTGTCTGGTTCCGCGAGTCCATCCATCCCGGTGTCGTTGCCATGCGCAGCGCTGCTGTTTTCAGGCAATTCATTCTTGGCTTTCCATTCCGCCCCTTGTTTGTCTATGGTCGTTAGTAAAACTGGCCTGTGCTGGGTCCTCAGGGTCCTGCAGCCGCGTGTAAGATTAATTAGCTTGGGATAGTGCTCGTTTGTACTGCAGTAGAGTGACTGGAGTGTGGCTTGTATTCCTAGTTTGACGTGTAACAAATGCAAGTGCAGAGATCAACTCATATGCAGAGAGATAAGAACATTTTAAACTGC | |||||||||
gi|78008708|gb|DV477096.1|DV477096 5561_F10_L19ZE5_070 Brachypodium distachyon developing spike EST library Brachypodium distach TAGCCAAGGATGACTTGCCAG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTCCGCTCCCTCCTCGTTTTGGCCCATCTCGCTGGCGAACGCTCCAGCCGCTCTCGTCTTCCTCCTCGCGCGAGCGCCGCCACCGCCGGTTGTTCTCCCCTTCGATTCTCTCGCTCCCGACCGTCTCTCCTCCATTAACCCCACGAACCGATCCCGCCCTTTAGCTCCCCGTTTAATCTCCTTAATCTTCTCCAATTCGTTACCGAGGCAAAAATCAAGGCTGCGAGCTTTACTGGGTCCTCCGCCCTGCCTTGCCCTACTGGGTCCTTCGCCCCTGTTTGTCCCTAAATCCGTACTTTCGCCATGTCGAGGCTGCGAGCGCTGTGGCAAGCTTCCGTGAACGCCACCAAGAGAGCTGTTGTATGGAATTCAGAAGACCTGTTTCCACCAAGTGAAAGATACATCTTCAAATTCAATTCAAAAGATGAAGTGAAAAAGTGGCACTTGTACTCGGACTCCGAGTATGGAGGTTTATCATCTGCATCATTGGAGATAACTGATAGTGTTTCTGGTGGAGATACTTCGTCAACTGGTGTCTTTTCTGGTAACTTATCCTTGGATATGTCTGAGGAATCACCATGGAGGATCAGGCGCAGTGGTTTCTGTGGAATGCGATCAAAGAAGTTTGATGGTTTCATTGACCTTGATTCATATGATACGATTGCCATGAAGCTCAGAGGGGATGGAAGATGCTACCTATCTACTATATACACTGAGAACTGGGTAAATTCCCCTGGACAAGAGGAAGATAACTCATGGCCGGCTTTTGTGT | |||||||||
gi|270456156|gb|GT838682.1|GT838682 CCYP1387.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TAGCCAAGGATGACTTGCCAG EST sequence (targeted fragment marked with yellow): CTCAACAAGCAGCAGAATGCTGGCTAATCATCAGGAGCGTGCCTGCTTTCCATCGGCCGGCTTCCATCCCATGGCCAGTTTGGGCGCACGGAGTGGAGGCTATGCAAAGCTGGCCGATAATGGCATGCAGCAGCGTGCTTCCATGATGAGTTAAAGCATCCTTTGGTGCGCCGCTGGTGGCAAATCATCCTTGGCTTATGAAAATGTGGTTCCGAACTCAAATAAATCAAACTTGGTTGGAGTCCTTTTGAGTTTCCTGTAATTGAAAGCACTGGTTGGCAGATGCTTTTTGTATGTTGACACTGAAATCCGTACCTGATCTCTTTTGTGTGTACCCTTCTAAAATAAAGTCATCCTGGCTCAAGGGGTAGGGTGGAGGCCATTGGCCT | |||||||||