| mature miRNA: TAGCCAAGGATGATTTGCCTG species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270472074|gb|GT853518.1|GT853518 CCYP9542.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TAGCCAAGGATGATTTGCCTG EST sequence (targeted fragment marked with yellow): ATGCCATTGCCTCTTGAAATATCGGAGGAAACCTGTCTATGTAAATGCTAAGCAGTATCATGGAATTTTAAGACGGAGGCAGTCACGCGCAAAGGCAGAACTTGAGAGAAAGGCGATTAAAGCGAGGAAGCCTTATCTTCATGAGTCGCGTCATCAACATGCAATGCGAAGGGCAAGAGGAACTGGGGGACGCTTCCTGAACACAAAGAAGAACGAAAACGGTGCTTCAAAAGAGAGAGCTGAACCGAACAAAGGCGACCAGAACTCGGAGTATCACCGTGTACCTCCTGACTTACAGCTCCGTCAGGCATGAAGCAGCAGTTTGCAAACCTAGAACAGTGGCTTCTGTCCACCGGCGTACAAGCATCCCCAGGGTGGATTTCTAACTCCAGCTTCGTGCTGCCATCTTCGCGACGCATATTCTCTGCGCAAAGCGCCCGGTATTTGGGTCCTTGGCAGAAATGCTGTCTGGTTCCGCGAGTCCATCCATCCCGGTGTCGTTGCCATGCGCAGCGCTGCTGTTTTCAGGCAATTCATTCTTGGCTTTCCATTCCGCCCCTTGTTTGTCTATGGTCGTTAGTAAAACTGGCCTGTGCTGGGTCCTCAGGGTCCTGCAGCCGCGTGTAAGATTAATTAGCTTGGGATAGTGCTCGTTTGTACTGCAGTAGAGTGACTGGAGTGTGGCTTGTATTCCTAGTTTGACGTGTAACAAATGCAAGTGCAGAGATCAACTCATATGCAGAGAGATAAGAACATTTTAAACTGC | |||||||||
gi|270438297|gb|GT823813.1|GT823813 CCYO7712.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN TAGCCAAGGATGATTTGCCTG EST sequence (targeted fragment marked with yellow): GCATGCTTCCGACAAAATATTACAGTTGTCACCATTTATGCCTCCTTGGGGGAAGGAGCACTTTGTCACTCACTAAATGAGACTGAAGTAACCACGGTGATCTGTGGACGGAAAGAGTTGAAAAAGCTTATTGATATAAATGGTCAACTTGATACTTTGAAACATGTTGTCTACATAAATGAGGAAGGTGTCTCAAGCGAAGTATCCTTGGCTAAACAATGCACTAGATGGAGAGTGGAGTCATTTGAGGAGGTAGAGAGGTTAGGATTGGAAACACCTGTCCAAGCAAATTTGCCTCTCCCATCTGATACAGCGGTAATAATGTATACAAGTGGCAGCACTGGAATGCCCAAGGGTGTCATGGTGAGCCACCGCAATGTCCTGGCTACAGTATCAGCTGTTATGACTATTGTGCCTGGACTTGGCAAGAAGGATGTCTACTTGGCGTACCTCCCACTAGCACACATCCTTGAGTTGGCCGCCGAGACGGTTATATTGGCTGTTGGGGCTTCTATAGGATATGGGTCACCTTTGACCCTGAATGATACATCAAATAAAATTAAAAGGGGAACTCAGGTGATGCTTCTGCACTGAAGCCAACACTTATGACTGCTGTACCTGCTATACTTGACCGTGTTCGTGACGGCGTAAGAAAAATGTAGATGCAAAGGGTGGTCTAGCAAGAGACTATTTGATATCGCGTACAGCCGTCGGCTCGCTGCTTGTTAACGGAAGTTGGTTTGGTGCATGGGGATTAGAG | |||||||||
gi|270400693|gb|GT783086.1|GT783086 CCXF9695.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo TAGCCAAGGATGATTTGCCTG EST sequence (targeted fragment marked with yellow): ATGTAAATGCTAAGCAGTATCATGGAATTTTAAGACGGAGGCAGTCACGTGCAAAGGCAGAACTTGAGAGAAAGGCGATTAAAGCGAGGAAGCCTTATCTTCATGAGTCGCGTCATCAACATGCAATGCGAAGGGCAAGAGGAACTGGGGGACGCTTCCTGAACACAAAGAAGAACGAAAACGGTGCTTCAAAAGAGAGAGCTGAACCGAACAAAGGCGACCAGAACTCGGAGTATCACCGTGTACCCCCTGACTTACAGCTCCGTCAGGCATGAAGCAGCAGTTTGCAAACCTAGAACAGTGGCTTCTGTCCACCGGCGTACAAGCACCCCCAGGGTGGATTTCTAACTCCAGCTTCGTGCTGCCATCTTCGCGACGCATATTCTCTGCGCAAAGCGCTCGGTATTTGGGTCCTTGGCAGAAATGCTGTCTGGTTCCGCGAGTCCATCCATCCCGGTGTCGTTGCCATGCGCAGCTCTGCTGTTTTCAGGCAATTCATTCTTGGCTTTCCATTCCGCCCCTTGTTTGTCTATGGTCGTTAGTAAAACTGGCCTGTGCTGGGTCCTCAGGGTCCTGCAGCCGCGTGTAAGATTAATTAGCTTGGGATAGTGCTCGTTTGTACTGCAGTAGAGTGACTGGAGTGTGGCTTGTATTCCTAGTTTGACGTGTAACAAATGCAAGTGCAGAGATCAACTCATATGCAGAGAGATAAGAACATTTTAAACTG | |||||||||
gi|270464742|gb|GT844974.1|GT844974 CCYP4896.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TAGCCAAGGATGATTTGCCTG EST sequence (targeted fragment marked with yellow): GGCTCAGGGACTGGCAGTCCCTATCTAGTTGTCTGTAGGCAAATCATTCTTGGCTCTACTGCATTGGGGTGCCTTCCACATCACCTACCTGTTCCTGAAAACTCCAGTGCTGGCTCTCAGGGATACTGTGATGATGGAGCTCCCCATATGCCTGTAAAATAGTATCGGAAGCACTACTGCTTACTAGCAGTGTACGAGTATGAACTCTATGGTGTCAGAATAAGTCTCGAACTTTAGGATCCTCGTTGATGTGTTAATCAGAGTCCGTTTGAAATATTCAAGCCTGAAACTTTTTTGTGCCTGTTTGTACACGTACTTTGGTAAATTGGAGTTCGTTTGGTTTGTAAACTTTAAGACATTCAGTATATTGTAATCACGATATATGGTTTGTAAGCTTGTCT | |||||||||
gi|270412604|gb|GT793061.1|GT793061 CCXG6150.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG61 TAGCCAAGGATGATTTGCCTG EST sequence (targeted fragment marked with yellow): AATCCGCTTATGCGCCTAGCTGCATCCCCCAGTTCAGAGATCCAGCACTCTGAACAGGGCAATCGGAAGCAGCATCTCTAGCCTGTCCGGGCTCGGAGGTGACAAGCCTGTACGAGCATGAAGATGTGGAACACCACAACGGTTTTGAGCAGCTCCGGACACACTTCTTCACCCCGCTGCCGAGCATCATGGACGGTGAGCATGGGGCTGGTAACCCCTTCAGGTGGGCAGCAGCCTCTGATGGCTGCTGCGACCTCCTCAGAGCATGACTGGAGGAGGGTAACGGACAGCCGAGATGGCAAGAACCGGCAACAGTCTGCCGCATTTGTCCAGCTCCGGTTCAGGGATCGTCCCTACCGTTAACTGGCTGTCCGTGGGCAATTCATTCTTGGCTCATGGCACTGTAGTGCTTTCGCTCATCGCCTACCTGTCCTTGAAACTTCGTTTCTTTCTCGGATCCTGTCATGAGTGGAACACCCCTTTGCCATAAAAATTATCATCCAAGTTGGTACAACTTGCTACCTTTATCTGAACTGTTTGGTGGTAGCAGGTTTAAGTTCATGTCTGAATAAATATATGAAACTTCACACTAGTTGGAATGGTTGTGGAATTGGAGTATCAGTGGAGTATTTGGAGTCTGTTAAGTACTGGGACTTGATTTTGTTTTGTTTGTGATCTGATGATGTATTGTACAAGTGTGCTCCAAGCTTGTGTAGTAGACCTGGGTTTGTTGTACTCTGTTGTCAGAAATTTGAGTTAAGTAATGTATGGACACTTTGTGCTGTAAC | |||||||||
gi|270456156|gb|GT838682.1|GT838682 CCYP1387.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TAGCCAAGGATGATTTGCCTG EST sequence (targeted fragment marked with yellow): CTCAACAAGCAGCAGAATGCTGGCTAATCATCAGGAGCGTGCCTGCTTTCCATCGGCCGGCTTCCATCCCATGGCCAGTTTGGGCGCACGGAGTGGAGGCTATGCAAAGCTGGCCGATAATGGCATGCAGCAGCGTGCTTCCATGATGAGTTAAAGCATCCTTTGGTGCGCCGCTGGTGGCAAATCATCCTTGGCTTATGAAAATGTGGTTCCGAACTCAAATAAATCAAACTTGGTTGGAGTCCTTTTGAGTTTCCTGTAATTGAAAGCACTGGTTGGCAGATGCTTTTTGTATGTTGACACTGAAATCCGTACCTGATCTCTTTTGTGTGTACCCTTCTAAAATAAAGTCATCCTGGCTCAAGGGGTAGGGTGGAGGCCATTGGCCT | |||||||||