| mature miRNA: TTGACCACGTTTATAGAAAAT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270476700|gb|GT862524.1|GT862524 CCYP15001.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TTGACCACGTTTATAGAAAAT EST sequence (targeted fragment marked with yellow): ACCGCAAACACCTTCAAGATATATATCATGACGGATTTAATAAACTATTTTAGAGTTGTAGATGTTGGTTGATTTTTCTATGAACTTGGTCAAATTTTAAGAAATTTGACTTTAAGACGAAGCTAGAACATCTTATAATTTGGAACAGAGGGAGTGCATACATAATCTTTGTTTCCAAAAACTAGTGTCGTATATCTTGTCAGAGGTCCTATCGAGCTTTATGATGGTGTCTTTGTTTTTATTTAGGTCTTTGATTGCTGACTGGATCGATGAATTCGAGACCAGTAGTGCTCATCTTCCTCCTGCTCGTGCTCATCGTAACATCACAGTTTGAGTGGAAGCAGCAGATTGGTGAGGCCGAGGCGACCCCAGCTGCTGCGACACGACGGAGGCAACAAGCGCTGGTCGTAAGGGAAGATGCTATCAATGAGAAAATAATATTGGCGCAAGAGAAAAACATCCAGCAGCTCACCGAGCTTATCCAGAGCCTCCAGGTGCAGCTACTGCACTGCCGCGGCAGTAACAGTACTACTGCTCATAGCGCCTCCTCGAATCAGTCGTTGACCAAGGACAGCAAAGTGGAGGGACCGGACATGATGGATGATGATCATATGAATCGTCACCTGAATGATCGTCATCGTCAC | |||||||||
gi|270441681|gb|GT823259.1|GT823259 CCYO7431.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN TTGACCACGTTTATAGAAAAT EST sequence (targeted fragment marked with yellow): CTTGTCACACGTTTGTGGGATACATATCTTGCTGAGGGAGATTATCTACCAGATTTTCTTGTGTACATATCAACTAGTTTTTTTGTTAACGTGGTCAGATAAGTTGCAGAAACTGGATTTTCAAGAGATGGTCATGTTTCTTCAGCACCTTCCAACCAGGAACTGGGCGCATGACGAGCTTGAGATGGTCCTCTCAAGGGCATACATGTGGCATACAATGTTCAAAAGCTCGCCCAGTCATCTTGCCAGCTAGGTTGCTGTGGGCCGTGATCGGTCATGACCAGAAGCAGCTTTTGCTGTACTGTAGACTCACAAAATCCCTTCGGGAGGAACTATGGGGCCAAGAGTGTCATCTTTATTTGAGTGCTGTACTAATACTGCTCCAATTTGTACAT | |||||||||
gi|270442822|gb|GT826128.1|GT826128 CCYO8869.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN TTGACCACGTTTATAGAAAAT EST sequence (targeted fragment marked with yellow): ATGGAAAACTTTCTTTGCAGGACATTTCTAACATAGAAGCGGACTGCTATGGTGTCTCTCAAAGTTTCTTGATGGCATGCAAGACCATTACACCTTTGCACAACCAGGGATACAACGCTTGTATTCAGGTTGAAAGAGTTGGTTCATCGAATAGACGAACCTTTGTCGAAGCACATAGAGGAACAAGGATTGGAGTTCCTTCAGTTTGCCTTCCGTTGGTTCAATTGTCTTCTGATACGCGAGGTTCCTTTTCATCTTGTCACACGTTTGTGGGATACATATCTTGCTGAGGGAGATTATCTACCAGATTTTCTTGTGTACATATCAGCTAGTTTTTTGTTAACGTGGTCAGATAAGTTGCAGAAACTGGATTTTCAAGAGATGGTCATGTTTCTTCAGCACCTTCCAACCAGGAACTGGGCGCATGACGAGCTTGAGATGGTCCTCTCAAGGGCATACATGTGGCATACAATGTTCAAAAGCTCGCCCAGTCATCTTGCCAGCTAGGTTGCTGTGGGCCGTGATCGGTCATGACCAGAAGCAGCTTTTGCTGTACTGTAGACTCACAAAATCCCTTCGGGGAGGAACTATGGGGCCAAGAGTGTCATCTTTATTTGAGTGCTGTACTAATACTGCTCCAATTTGTACATCTTAATGTAAAACTATTGCATCAGTGATAAATGAATGCTACAGATGGTATTGAATATTTATGACCTCATTATGTCAT | |||||||||
gi|270394703|gb|GT779948.1|GT779948 CCXF14185.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachy TTGACCACGTTTATAGAAAAT EST sequence (targeted fragment marked with yellow): ATGTCTGCTGAGAATCTACCCCAACAACTTCTGGGGTGTAAAAGGTGGAGACCATAGGCCCTAGAGATACAACAAAATTTGGGCCGGCTCACGCAACGGCTTGAGTGGAGCGCTGCAGAAAAAAAGGCCTATGACTGAGAAGCTGGGAAATAGATGCTTCTCCAAGCATCTGACACTCCAAACTTCACTTTTGTTTCCTACATTTCTAGGTATAAGATGTTCTAGGTCTGTCCTGTGTCAAACTCTTCAAATATTGACCGAATTTATAGAAAAGTTTACTAACATTTACAACTTCAAATTAGTTTTATCAAAACAAGCATGGCATATATATTTTCATAGCATACTTATTAATATATTCCCTCCGTTTCATAATTCTTGTCGAAATATTACATGTACCTAGACGCTTTTTAGGAATAGATATATCCATATTTGGGCAAATTTTAGACAAGAATTATAGTACGGAGGAAGTACATATTAATATTAATACATTTTCTATAAACGTGGTCAAAATTTAAAACGTTTGACTTAGGTCAAACCTAGAAGTCAGTGTTGAAGAGCTGTCGAAGCTTGTGATTTGCCATCAACCAGTTTGTAAAGGCTCTGATATCGCCTCAAAATCTACCACGAGTAACTAGGCGAGACTTTGGTCTTAATTTAGGAGGATTGGGTGGACTTGTGTGTCTGTGAGTTTTGTGTGACTCAACCCTCTCAATGAAGACGTAGGATCGTGCCAACGATCTGAACTTCGGG | |||||||||
gi|270418929|gb|GT800992.1|GT800992 CCXG10778.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1 TTGACCACGTTTATAGAAAAT EST sequence (targeted fragment marked with yellow): TCTCAAACTTACATCAGCGACGGTGAAGATGATGCTGGCAATGAATCCAATGAATATCTCCGAATTGGTTCAGTTTTAACCGATGAAACTCCAGTCCAGTGCTCTCTCCGGTATATGACTGCGTGTTCAGAACAAGGCAAAGCCCAATAAGTGCCCATGTGGTTCCAAAATCTGGACTACTACAGTACAGTAATAGCATGTACTTCCTCCATTCTTAAATATAAGATGTCCTATCTTTGTCGTAAGTCAACCAAGTTATAAAAAAATTCTATCAATGTCTACAACTCTAAATTGGTTTTATTGAAGCCGTCATGACATATATCTTCATAGTACACTCATTTGATATTGTAGATATTAATACGGTTTTCATAAACTTGGTCAAACTTTAAGAAGTTCGATTTAGGAAAAAGCTGGAACATCTTGTATTTAGGAACGGAGGTGGTAGCTCTCTACTGAAGATGTTGTCGATATTTTATTCATATGTGTTCAGTCTTCTTACAAACAGGCGGACATATGACAAAGTTGATGATACACGGATTTGCAAAACTGACAAGTCTGTGACCAGCAGCATCATTTGCATCTAGTTCGATCACCTCCATGCACTTGCCATATTCTACAGATTGAACAAGGTTTGTTCTGAGAAGAAGCTTGCAAGTGCAAATGTAAACCAGGGTTCTGTACGTTCCTTTTGCAGCAGCTGTAAATTACTGTATGTCGCGTCTGTGATCT | |||||||||
gi|270441682|gb|GT823260.1|GT823260 CCYO7431.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN TTGACCACGTTTATAGAAAAT EST sequence (targeted fragment marked with yellow): TGCAGGACATTTCTAACATAGAAGCGGACTGCTATTGGTGTCTCTCAAAGTTTCTTGATGGCATGCAAGACCATTACACCTTTGCACAACCAGGGATACAACGCCTTGTATTCAGGTTGAAAGAGTTGGTTCATCGAGTAGACGAACCTTTGTCGAAGCACATAGAGGAACAAGGATTGGAGTTCCTTCAGTTTGCCTTCCGTTGGTTCAATTGTCTTCTGATACGCGAGGTTCCTTTTCATCTTGTCACACGTTTGTGGGATACATATCTTGCTGAGGGAGATTATCTACCAGATTTTCTTGTGTACATATCAGCTAGTTTTTTTGTTAACGTGGTCAGATAAGTTGCAGAAACTGGATTTTCAAGAGATGGTCATGTTTCTTCAGCACCTTCCAACCAGGAACTGGGCGCATGACGAGCTTGAGATGGTCCTCTCAAGGGCACC | |||||||||
gi|78015003|gb|DV483391.1|DV483391 5384_F05_K10Z_037 Brachypodium distachyon leaf EST library Brachypodium distachyon cDNA clone TTGACCACGTTTATAGAAAAT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGATCTTCTACTTATTTATTTAGAGTCTTGGCTTTGTTTTTGTTCTTTTGCTTTCTTTCAGCTTATCCATATTTTGTCTTTTGTAACTTTCGCCTTCTGGGCGCTTCTTCAAATGAAAATAGCAGTTATACGTGCGGGTTCAAGGAATTTTATTTATTTATGTTAAGACAGTATCTAGATGAGTGTGTTTGAGAGGGAGTAGTAGTTATATGTGTATCTTGCAGTTTGGATGTTTTGGAGTTACGATAGAATTTACTTGTCCAGTGATGACATAAAGTTTATACCATATATGCCAACCCAACCCCATATTTGGTAAATGTTCATCCTACTCCTGTCATCCCTCTAAAATATAAATGCTCACAAAATGGCACTCATGTTAACCATATTTAATCATTCTGTTGATATAATTAGATTCTCTACGTTTTTCCTGTTGATTACCGGTGGGTGAAATGATATATCCGGGTGTATTAACTGTAGAATCTTCTTGTTTATTACTCCTTCCGTTCCTAAATATAAGAAGTCCTACTCTTGTCATAAGTCAAACTTCTTCATGTTTGACCAAGTTTATAGAAAAATCTACTAAGAATATCAAATGAGCGTGCTATGAAAATATATATAATAACAAATTTAATAAAACTAATTTGGACTTGTAGATTTTTCTAAAAACTTGGTCAGACTTGAAGAAGTTTGACTT | |||||||||