| mature miRNA: TTGGTCTAATCGTTGGTCAAA species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270426776|gb|GT808318.1|GT808318 CCXG14934.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1 TTGGTCTAATCGTTGGTCAAA EST sequence (targeted fragment marked with yellow): TGATACATGGCTCCCCGAGTACTGCAGCGAAGTCAACTATCAATCGAGTCGGGATATATATAGTTAGGCCTTTTAATAATTGAGATCACGACGGGTGAGAAAAACTGCTCAGACCGATGAATTATATACCACGGACTTCACTGAAGATGTACGCAAGAATTGGACAAATATGCCCTATATAAAATTGAAGTACCCGGCATTAAGCTCAGATGGCTACCGTCAGGTAGAAGGATGCATTAAAATTGGGCTAAATTGTCTCAGCAAAAAGCGGAAGGACAGACCCAATTCAGCAAACATCGTTCACAAGGTCGACCAAATTGGTGCAGGCTCAAGCTCGGTGTTTCACAGGCCTCACCTTTTTGGGCGTAAGTGATACGTGGGACCTTGGATCATCAGAGGGATACCGGGATTTCAGCAAGACATACTATTAGAACATCCTTTTAGAAGTAATATTTGCATCCTCCTTCATGCAACAATTTGAATTACTCTCAAGTTGGTTTATGTAAGTCACCTAGTTGTTGCAAGATTCAAGTTGGACCAGTGATTAGACCAATAAAATGTGGTTTTGTCAAATATGTGGCCGGAAAGTGATGTCATTGGAATATGCTTTTGAATAATTCTTGTCTACATTGTTAGCTAGCATATCATTTGTCTAACTCGTGGTCAAACGCGAAATTTTCAATTTGTGGATGTCTTAAACTTCAGAATGAATGTTGGT | |||||||||
gi|270423835|gb|GT806593.1|GT806593 CCXG13960.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1 TTGGTCTAATCGTTGGTCAAA EST sequence (targeted fragment marked with yellow): GGACAAACGCTCAAAATAATAAAGGTATCTGTAAAGGTCTGGATGCATTACATGACAAGGAAGACGTATTATTCACTCGGATCTTAATCCTGCCAACATTCTGTTGGACGACAATATGGAGCCCAAGATTGCAGATTTTGGTTTATCAAGGATCTTTGGTGAAAACCAGACACATACTCGCATAACCAATTCTAAGAGTGCAATGGAATACATGGCTCCCGAGTACTTGCAGCGAGGTCAACTATCAATCGAGTCGGATATATATAGTTTAGGCCTTTTAATAATTGAGATCACGACGGGTGAGAAAAACTGCTCAGACGATGAATTATATACCACGGACTTCACTGAAGATGTACGCAAGAATTGGACAAATATGCCCTATATAAAATTGAAGTACCCGGCATTAAGCTCAGATGGCTACCGTCAGGTAGAAGGATGCATTAAAATTGGGCTAAATTGTCTCAGCAAAAAGCGGAAGGACAGACCCAATTCAGCAAACATCGTTCACAAGGTCGACCAAATTGGTGCAGGCTCAAGCTCGGTGTTTCACAGGCCTCACCTTTTTGGGCGTAAGTGATACGTGGGACCTTGGATCATCAGAGGGATACCGGGATTTCAGCAAGACATACTATTAGAACATCCTTTTAGAAGTAATATTTGCATCCTCCTTCATGCAACAATTTGAATTACTCTCAAGTTGGTTTATGTAAGTCACCTAGTTGTTGCAAGATTCAAGTTGGACCAGTGATTAGACCAATAAAATGTGGTTTTGTCT | |||||||||
gi|270481439|gb|GT864958.1|GT864958 CCYP16426.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TTGGTCTAATCGTTGGTCAAA EST sequence (targeted fragment marked with yellow): GAGTAAAAACTGCTCAGACGATGAATTATATACCACGGACTTCACTGAAGATGTACGCAAGAATTGGACAAATATGCCCTATATAAAATTGAAGTACCCGGCATTAAGCTCAGATGGCTACCGTCAGGTAGAAGGATGCATTAAAATTGGGCTAAATTGTCTCAGCAAAAAGCGGAAGGACAGACCCAATTCAGCAAACATCGTTCACAAGGTCGACCAAATTGGTGCAGGCTCAAGCTCGGTGTTTCACAGGCCTCACCTTTTTGGGCGTAAGTGATACGTGGGACCTTGGATCATCAGAGGGATACCGGGATTTCAGCAAGACGTACTATTAGAACATCCTTTTAGAAGTAATATTTGCATCCTCCTTCATGCAACAATTTGAATTACTCTCAAGTTGGTTTATGTAAGTCACCCTAGTTGTTGCAAGATTCAAGTTGGGCCAGTGATTAGACCCAATAAAATGTGGGTTTTGTC | |||||||||
gi|270475595|gb|GT857147.1|GT857147 CCYP11940.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TTGGTCTAATCGTTGGTCAAA EST sequence (targeted fragment marked with yellow): GATGCAGATTTTGGTTTATCAAGGATCTTTGGTGAAAACCAGACACATACTCGCATAACCAATTCTAAGAGTGCAATGGAATACATGGCTCCCGAGTACTTGCAGCGAGGTCAACTATCAATCGAGTCGGATATATATAGTTTAGGCCTTTTAATAATTGAGATCACGACGGGTGAGAAAAACTGCTCAGACGATGAATTATATACCACGGACTTCACTGAAGATGTACGCAAGAATTGGACAAATATGCCCTATATAAAATTGAAGTACCCGGCATTAAGCTCAGATGGCTACCGTCAGGTAGAAGGATGCATTAAAATTGGGCTAAATTGTCTCAGCAAAAAGCGGAAGGACAGACCCAATTCAGCAAACATCGTCCACAAGGTCGACCAAATTGGTGCAGGCTCAAGCTCGGTGTTTCACAGGCCTCACCTTTTTGGGCGTAAGTGATACGTGGGACCTTGGATCATCAGAGGGATACCGGGATTTCAGCAAGACATACTATTAGAACATCCTTTTAGAAGTAATATTTGCATCCTCCTTCATGCAACAATTTGAATTACTCTCAAGTTGGTTTATGTAAGTCACCTAGTTGTTGCAAGATTCAAGTTGGACCAGTGATTAGACCAATAAAATGTGGTTTTGTC | |||||||||
gi|270426775|gb|GT808317.1|GT808317 CCXG14934.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1 TTGGTCTAATCGTTGGTCAAA EST sequence (targeted fragment marked with yellow): CTACATGGGTCCCGAGTACTTGCAGCGAGGTCAACTATCAATCGAGTCGGATATATATAGTTTAGGCCTTTTAATAATTGAGATCACGACGGGTGAGAAAAACTGCTCAGACGATGAATTATATACCACGGACTTCACTGAAGATGTACGCAAGAATTGGACAAATATGCCCTATATAAAATTGAAGTACCCGGCATTAAGCTCAGATGGCTACCGTCAGGTAGAAGGATGCATTAAAATTGGGCTAAATTGTCTCAGCAAAAAGCGGAAGGACAGACCCAATTCAGCAAACATCGTTCACAAGGTCGACCAAATTGGTGCAGGCTCAAGCTCGGTGTTTCACAGGCCTCACCTTTTTGGGCGTAAGTGATACGTGGGACCTTGGATCATCAGAGGGATACCGGGATTTTCAGCAAGACATACTATTAGAACATCCTTTTAGAAGTAATATTTGCATCCTCCTTCATGCAACAATTTGAATTACTCTCAAGTGGTTTATGTAAGTCACCTAGTGTTGCAAGATTCAGTTGGACCAGTGATTAGACCAATAAAATGTGGTTTTGTCAATATG | |||||||||