| mature miRNA: AATCCAGCTAGTGGTGGTGGT species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|308694753|gb|DK574635.1|DK574635 DK574635 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone AATCCAGCTAGTGGTGGTGGT EST sequence (targeted fragment marked with yellow): GCATTGACAATTTAAAACTCTTTAAATAGCTTTGGTACATCTTTGAACAAGGTTAAGAGTTATGCTGAACAAAAACAAAGGAAAGGCAAAGGCCAATAACATTCATCTTCTTTTTCTTTTCCACCCTAATAAACAAGGCTGAAACTAAGCAGTTAAAAACAAACCAATTAAAACAATCTTTATTTTTGAAGTTAATATAAAGAACTAATCCGAGAGCTCAGCCCCGGAATCTGTCTGCAAATTGTTGTTTGTTGCTAGTCATGTTAATGACAGTGAGTCACTTGGCTACAGCTAAAAATCTGGGAGACCATCGCATCAGGCAGATTTTTGGACAGCATGAATCACGGTGTTCATGTCCGAACCACCACCACCACTGGCTGGATTTGGATGGAAGGCTGATTGCCTCGAAGACGAACCTCCGACGAGTTTCAATGAAAGAGACTGTTCTGATACACCGTTTTGGCTAGACTCCCCGAGGCTGAGCTTAGACATGCCAAGAAGCTGATCAACATTAATAGGGGCGGCTTTTGAGTGCACAGCTGTTGGCCTGAGTATCTCGTGAGTCTCTTCCTTTGCCGGCTCGGTGACATACGCAGCAGGCCATACCGGGAAGGGGAATGAGTAGAATGGTGAGAAGTAAGTCGGGTACAGCACAGGGAAAGAACCAGGTGGTTGTTGTACTTGTAGCTGCGTTTGGATGGTGTCTTCTGGTGTGAAAGAAGAAGAGGAAGCTGTTACAGTTGGCGGCTCCTCAGCACTAGAGTTGGTGGATTTCATGGATTCA | |||||||||
gi|150916941|gb|ES947402.1|ES947402 49RDOAT_UP_051_B02_27JAN2006_014 Brassica oleracea 49RDOAT Brassica oleracea cDNA 5', mRNA s AATCCAGCTAGTGGTGGTGGT EST sequence (targeted fragment marked with yellow): TACGGTTGGAACACTTGCTGGTGGTAGATACTATAACTCTGATGTTGTAGCCGCTGTTATTCTAGGCACTGGCACTAATGCAGCTTATGTCGAACGCGCAAATGCCATTCCAAAATGGCAGGGCTTACTTCCCAAATCTGGAGAAATGGTGATCAACATGGAGTGGGGAAACTTCAGGTCATCACATCTTCCCTTGACCGAGTACGACCACTTGCTGGATTTCGATAGTTTGAATCCTGGTGAACAGATTCTTGAGAAAATCATTTCCGGTATGTATTTGGGAGAGATCTTGCGTAGAGTTCTTCTGAAGATGGCTGAAGAGGCTGCTTTCTTTGGCGACTCCATCCCACCTAAGCTGAAAGTACCATTCATCATAAGGACTCCGACCATGTCTGCTATGCACAGCGACACTTCTCCGGACTTGAAGGTTGTTGGAAGCAAGTTAAAGGACATACTGGAGGTCCCTACTACTCTGAAGATGAGAAAAGTTGTGATCAGTCTCTGTAACATAATCGCCACCCGAGGAGCTCGTCTCTCTGCAGCTGGGATCTACGGAATCCTCAAGAAACTAGGAAGAGACGCACCGAAAGATGGAGAAACAACGCAGAAATCTGTGATTGCCATGGACGGTGGACTGTTCGAGCACTACACTCAGTTCAGCGAGTGTATGGAGAGCTCATTGAAAGAGTTGCTTGGAGATGAAGCATCAGAGAGCGTC | |||||||||
gi|308719946|gb|DK539174.1|DK539174 DK539174 full-length kale cDNA library Brassica oleracea var. acephala cDNA clone KALE-062N1 AATCCAGCTAGTGGTGGTGGT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAAAAAAAAGGGGCTTAAAAACCCCCCGCGACCCCCAGTACTGGTTGGATTCCTGGCTCCTCCGGGCCCCAAAACCCAAAAACTCCCTGGTAAAAAAAACCCAAAAAGGGGGGGAATGCCCCCCGGGTGGCCCCAAAAACCCAAATCTAAAAAGTTTATACCTAAACCAAAAAAAAAAAAAAAAAAAAACCAAAAAGCCCTTAAACCTCCCACCCCCTGAAAAAATTTTGCTTTCAAACATGGTCTGGGACCAACCGGGTCACGAATTTCAAAAGGAAGCCAAAAACTCTTGGGGGTTGAAATTTAAAACGGAAGAAATGGGCGGGCATTGGGAAACAAGGTTCGGGTCCCTAACTCTCCAATACGGTTAATACAACTCCAAGCTGTGCTCTCAATTAGGGATATTGGAGAACCTCATGAGATACTGCTCTGCGTAACGTTTTGAGACTGGCATGTGAGTTTACTGGGATTAATTCGTAAGTTGATCTGACTGATTCTCCTCGTGTGTACTAAACTGAGATTCAAACGTATCAGCACTTCAGGACCAGCTCCAACATACCTACGAACATGCATACATCGGGTATCTGGCGAAGTCTGACGATGACTGACAGTGAACTGT | |||||||||
gi|308646719|gb|DK570392.1|DK570392 DK570392 full-length kale cDNA library (leaves) Brassica oleracea var. acephala cDNA clone K AATCCAGCTAGTGGTGGTGGT EST sequence (targeted fragment marked with yellow): CCACCCTAATAAACAAAGCTGAACTAAGCAATTCAAACAAACCTAACTAAAACAATCTTTATAATATAACCAAGAGCCCAGCCCTGGCACCTGTCTGCAAATTGTTGTTGTTGTATAGTCATGTTAATGACAATGAATCACTTGGCTACGGCTACAAATCTGAGAGACCACCGTCCCATCAGGCAGATCTTTAGACAGCATGAATCACGGTGTTCATGTCCGAACCACCACCACTAGCTGGATTTGGATGAAAGGCAGATTGCCTTGAAGCCGAACCTCCAACGAGTTTCAGTGAAAGAGACTGTTCCGATACACCGTTTTGGCTAGACTCCTTGAGGCTGAGCTTAGACATGCCAAGAAGTTGATCAACCTTAATCGGGGCGGCTTTTGAGTGCACAGCTGTTGGCCTGAGAATCTGGTGAGTCTCTTCCTTCGCCGGCTCGGTATCATACGCAGCAGGCCACACCGGGAAGGGGAATGAGTAGAATGGTGAGAAGTAAGCCGGATACAGCACAGGGAATGAACCAGGCGGTGGTGGTTGTAGCTGCGTTTGGATGCTGGCTTCTGGTGCCTCATCACCAACAGAGTTGGTGGATTTCATTGACTCACACTCTTCCGTTTCCAGGATCAACGGTGCCGCCGGAACAGAGTCAGTGCCCTCGTCAGGAATGATATCAAAGAGACTAGAACGCCTCTTGCGGCG | |||||||||