| mature miRNA: AGAGATGAAGATTTGGATTGG species: Brassica rapa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83819841|gb|CX268064.1|CX268064 38RDBRM_UP_030_C04_12JUL2004_028 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence AGAGATGAAGATTTGGATTGG EST sequence (targeted fragment marked with yellow): GAATCATCGTTACGTAACAGCTTCAGTTTACTTTAAGTTCTTTAATCGTGCCTTACACTAAATTACCTCACTCCTCCCGCTCAAGCAGTAAATCAAAATCTTCATCTCCCAAGTAACCCACGGAAACTACGATTAATCTCTCCAGCTATTGCCATGGAAGAAGTGAAGATATTGATAATTTTGCCATTCTTAAGCTATTGTCATGTTTTGGATTCTCATATTTTGGCTTTTTTATATCAAAAAGAAATTTGGATGATCTTAGTAAACAAGTGAGTGAAACTATCGATACCATTGTTAATGCAAGCTTGACGATTGTTTTAATCGGTGTTGGAGACGGGACATGAGAAAACATGAGTAAGTTTGATGCTAGGATCCCTAAGCATGAATTCAACAACTTCAGGCGAAAGAAGAAGTTGTAGCAACGATGATACATCACCTGACCCTGGAGATCATGAGAAGAAGAAGCTTTACGAAGCGATATTGTGGGTGAAGCCA | |||||||||
gi|150118084|gb|EE519056.1|EE519056 36RDBRG_UP_035_F02_23JUN2004_006 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence AGAGATGAAGATTTGGATTGG EST sequence (targeted fragment marked with yellow): ATCATCATCTTGGCGTCGACAAGCAAGTTCAGCAACCTATTGATTGACTCCGATCATCGTAACGTAACAGCTTCAGTTTACTTTAAGTTCTTTAATCATGCCTTACACTTGATTACCTTACTCCTCCCACTCAAGCAGTCAATCAAACTCTTCATCTCCCAAGTAACCCACGGAAACTACGACTACAAATCTACAATCTCTCCAGCTATTGCCATGGAAGAAAAATTTGGATGATCTTAGTAAACAAGTGAGTGAAACTATCGATACCATTGTTAATGCGAGCTTGTCGATTGTTTTAATCGGTGTTGGAGACGGGCCATGGGAAAACATGAGTAAATTTGATGCCAAGATCCCTAAGCAACTTAGTTTGTAAATTTCACAGAGACCATAAAGAGATTCATCGGAGACAGTCAAAGAAACTGCATTTGCTCCTGCTTCTCTAATATATGGAGATTCCCTTTCACTATCAAGCAGCAACTGAACTGATCATAGAAATTTGCAGAAGTTGTAGCAACAATGATACATCACCTGACCCTGGAGATCATGAGAAGAAGAAGCTTTATGAAGCGATATTGTGGGTGAAGCCATGGCAGAGATGATCTAGCAGTGCAACATGTTTGCTGATTATGCTGTTAAGACCGTCCAACAGATATCTAAATCATTGTTCCCTTATGAACTTCAAGAAGTTGCAAGTCTCAGTTCACTAGACATCTACTTATT | |||||||||
gi|150903645|gb|ES934103.1|ES934103 38RDBRM_UP_074_A07_07DEC2005_063 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence AGAGATGAAGATTTGGATTGG EST sequence (targeted fragment marked with yellow): CTGCAGTCTCTTATCCTTCATCCAAGTCTTCTTCTCTTCCCTCCAAAACTTCCTTCGTCTCCCCTCAAAGGATTTTCCTCAACAACAAGAGCACACTGTGCTAC | |||||||||
gi|83824840|gb|CX273063.1|CX273063 39RDBRT_UP_049_F06_22JUL2004_038 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence AGAGATGAAGATTTGGATTGG EST sequence (targeted fragment marked with yellow): AGGATCAACGGAAGGAAGCTTCTCTTCTCTTATCGATCTGTGTTGAAAGGTTAGCATTTTCTCAATCAAATCTTAATCTCTCATCTCTTCTCCAAATCCCCAAATCGAGAGATTTTAAACTGGAACGTTAGCCGAGAGATATTGAACCAAAAAGTTGCAACACCCAAATTAACGCTGAGATTTCGAATTTTCCGGAAATGCATACGAACATTCGCTCTCTAAGAGCCGATTCCTGTTCTCGAAGCATCAACAAGGAACAAGCCTGGAGAAGAAGGTATTAGCCCCACACAGAGATGCTCTCTGGTTCAGGATCCACTTCCTGTGACACACACACCAACAACGAGGATCAGGCAAACATGGGTTACATCTCGAGGAAGAAGCATCCTATAACAACAGAAGAAGTTGATGATGGTCAGGACAACACCGGACATAAGAAAGTGAAGAAGAACAATTCCGAAGCAGAAGCTGATTCTTCTTCATCAGACAACTCTTGTTTTGTGGCCCCTGTTACCGCTTCCAATCTGGAAGAAGATTCTCTGTGTCTTCCACCAGATTTCACAATCTCAAATGGTTTTAAAAGAAAATGCCGCAAGATTGTTTTAACAGATGAAAGGGAAAGATCATGGGCGTTGGATCTGAGGTTCAACAAA | |||||||||
gi|254064986|gb|GR727712.1|GR727712 MMN2_2329 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA, mRNA se AGAGATGAAGATTTGGATTGG EST sequence (targeted fragment marked with yellow): GACAGAGAGAGAGAGAGAGAGATAGAGAGAGACAAAGGTTTCGCCAGACTCGCCGGAGAAATTAGCGACTACGGTGGTCAGAATCTCCAGTCCCTTCTTCGCCGGAAAATCATTGATCTCTACAAATTCTTCAGCTGAGACAAATCGGACAAGAAGCTCCAAAAATGTCGTCGTTAGAACAAGAAATGTTCTTACAGTGGGGAAACAAGAAGAGAATGAGACGCCTAAGAGCCGCCGCCAACAAGGACAACAAACACATCTCGCAACGCCAATCTAACTCTTCATCTCACGAGACCTTCCTCTTCCACTCCTCGAGATTCTCCAGAGGATCAGAAGGTGCAATACTCAGATCCGGAGGATCACTACCAGAGAAAGAGAAAGAGGAGAGGTATTACACTACGAGAGGCGTTGTTGATACCAACGGAGAAGACAGCAACGGCAAGGGAGAGGAGAGTATGTGGCCGAAGCTGTTTGTGACGCTGTCGAGCAAAGAGAAGGAAGAAGACTTCATGGCTATGAAAGGCTGCAAGCCTTCTCACAGGCCTAAGAAGAGAG | |||||||||
gi|150906673|gb|ES937131.1|ES937131 39RDBRT_UP_092_B01_25JAN2006_013 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence AGAGATGAAGATTTGGATTGG EST sequence (targeted fragment marked with yellow): GGTAAGAAGAAAGACAGAGAGGCCCATCTTCCTTGCATAGTTGATCAAACATGGCTGCTGCTGCTATAGGTGCTGCAGTCTCTTATCCTTCATCCAAGTCTTCTTCTCTTCCCTCCAAAACTTCCTTCGTCTCCCCTCAAAGGATTTTCCTCAACAACAAGAGCACACTGTGCTACGGAGAGGCGTGTGTATATGGGGGAAGAGTGAAGGCTCAGGTATCAACAGAGGCGCCAGTGAAAGTAGCCAAGGAGTCAAAGAAACAAGAAGAAGGAATAGTTGTCAACAAATTCAAACCAAAGGAACCTTACACAGGTCGATGCCTCTTGAACACCAGGATCACTGGCGATGACGCTCCCGGTGAGACCTGGCACATCGTCTTCACCACCGAAGGTGAGGTTCCGTACAGAGAAGGGCAGTCGATAGGAATAATTCCAGAAGGAATTGACAAGAACGGGAAGCCTCACAAGCTGAGGTTATACTCTATCGCCAGCAGTGCCATTGGTGACTTTGGAGACTCCAAAACCGTTTCTCTCTGTGTCAAGAGATTAGTTTACACTAACGAAAGCGGAGAGGTTGTTAAGGGAGTCTGCTCCAACTTCTTGTGTGACTTGAAGCCTGGTGATGAGGCAAAGATCACTGGACCAGTTGGAAAAGAAATGCTTATGCCTAAAGATCCTAATGCCACCATCATCATGCTTGGAACAGGAACTGGAATAGCTCCATTCAGATCATTTTTGTGGGAAATGTTCTTTGAGGAGCA | |||||||||