| mature miRNA: TCGGACCAGGCTTCATTCC species: Brassica rapa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|150898852|gb|ES929310.1|ES929310 36RDBRG_UP_078_D08_19JAN2006_058 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GAAAAGCCCAATATAGCTATTGCTTCAATGGGCCTTATCATTCAAATCACTTCTCTTGTTTACATTTTCCCTCATTCCTTGAGCTCCGCAATCTCCACTCGGGTCGGAAACGAGCTTGGTTCGAACCGGCCACAAGCAGCGAGAAGAGCCGCCATCATCGGACTCAGTCTCAGCATTCTCCTCGGGATCATGGCGTCCACGTTCATGTTCTCGGTCAGAAACGTATGGGCCACGTTTTTCACGGATGAGAAGGACGTCATTGATTTAGTTTCAAAGGTTCTGCCTATTGTCTGCCTTTGCGAGCTGGGAAACTGCCCTCAGACGACGGTAGGTGGCGTTCTCAAAGGGTCTGCGAGGCCGCGGGTGGGAGCTTGGATTAATACGGTGGCGTTTTATTTCGTTGGTTCGCCTGTTGCATTTGTTCTGGCGTTTTGGTTTGGGTATGGGTTAAAGGGACTTTGGCTCGGGATGCTCGCAGCGCAGATAACTTGTGTGGTTGGTATGATGGTGGCGATGTATAGGATTGATTGGGAACTTGAGGC | |||||||||
gi|887080|gb|L37502.1|L37502 BNAESTDQ Mustard flower buds Brassica rapa cDNA clone F1099, mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): TGAACATAAACCAAGAACATACCATTCTTTGTAAGCTTTAGTAATCTAAACCAATGGCGAACTCCACCATTCTCCTTAATTACTGGCCAAGCATGTCCTGTATGAGGGCTAGAGTCGCGCTGAGAGAGAAAGGTGTTGTGTTCGAGGCCAGAAAAGAGGATCTCACGAACAAGAGCCCTTTGCTCCTCCAGAGTAATCCGATTCACAAGAAGGTCCCGGTTCTAATCCACAACGGTAAACCGATTTGCAAGTCTCTCAATGTTGTCCAGTATGTGGACGGAGGCTTGGTCTGACCAAGAACCCCATTTCTTCCCCTCTAAATCCTTACGGGGAAAGCTCAGGGCTAG | |||||||||