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mature miRNA: TGCCTGGCTCCCTGTATGCCA
species: Brassica rapa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|254063891|gb|GR727365.1|GR727365 MMN2_1982 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA similar

TGCCTGGCTCCCTGTATGCCA
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TCGGACCGAGGAAGATGCGGT

EST sequence (targeted fragment marked with yellow):
GGTCCCATCCAAAATCTCCACGTACCAAGCCTCTGAGAATCCGGTTTACAAGGGTTATAGATCAGCTATTGAGTCTACTAGCCAAGAAGAGTCTCTGATGAGCTTTGCTATATGGGAGCCGCCACACGGACCATACAGGACATTTAACTACCCATGGCAGAACTATGTCAAGCTCAGTGGCGCTCTCAAGCATTGTGCATTCACTGTGATGGCATTGCACGGCTGCATTCTCTCAGAAATCCAGGCACCTGAAGAAAGGAGACAAGTTTTCCGACAAGAGCTTCAGAGAGTTGGCGTAGAAGGAGCCAGGCTCCTTAAGAGAGCTCGGCGAAAAGGTGAAGAAGATGGAGAAGCTAGGACCAGACGACATGCTCTTCGAAGTCCACTTAGCTGCCGAAGGACTACAACACAAGATAGACATGAAGTCTTACCTTCTTGTCAACTCCGAGCGCTGGGAGATCGGAAACAGATCACGGTCAGAGCCTCAAGAGCTACTCTCCATGGAAGATTTAGATCCACCAGAGAAACACAAGTCTCCCATCTACGCCTTCAAGTCCCAAAGCGAGGC