| mature miRNA: TGGAGAAGCAGGGCACGTGCA species: Brassica rapa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|150122688|gb|EE523660.1|EE523660 37RDBRH_UP_018_G12_31MAR2004_084 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GGCTTTAGAGCTTCTCCCCCCACAATGGATATGGATGTCTTCAGTGGTTGGGAGAGATCATCAAGATATGAAGATGAAACCATAATGCCACCTGGGTTTAGGTTTCATCCTACCGATGAAGAGCTCATCACTTACTATCTCCTCAAGAAGGTCCTTGACTCCGGTTTCACTTGTGCCGCCATCTCTCAAGTTGATCTCAACAAGTCTGAGCCTTGGGAGCTTCCTGAGAAAGCAAAACTGGGAGAGAAAGAGTGGTACTTCTTCACACTAAGAGATCGTAAGTACCCAACAGGACTGAGAACAAACAGAGCAACAGAAGCTGGTTACTGGAAAGCAACTGGTAAAGACAGAGAGATCAAAAGCTCAAAGACAAAGTCGCTTCTCGGGATGAAGAAAACACTTGTCTTTTACAAAGGTAGAGCTCCTAAAGGTGAAAAAAGCTGTTGGGTCATGCACGAGTATCGCCTCGACGGCAAATTCTCTTACCAGTACCTTACTTCCTCCGTTAAGGATGAATGGGTTCTCTCTAAAGTTAGTCTGAAAAGCAGCGTAGTTGTCGGTAGAGAGCAGACGAAGTTGCTCTCTTCTTCTACCGCTTCCGTCGCCGGAGAAGTCTCCTCTTCTGCTCCGATCATTGACGCCTTTGCGACGGAGCACGTGTCCTGTTTCTCCAATACCTCCGCTGCAGCTCATGCCGATACGAGCTTTCCTACGTACCTTCNCGCTCCGCCGCTTTCACTGCCACGTCAGCCTCGACGAATAGGTGGTGATGACGTGGCGTTTGGTCA | |||||||||
gi|150906801|gb|ES937259.1|ES937259 39RDBRT_UP_093_F07_25JAN2006_053 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GGCAACACAACACTTCTTCTCTCTCTATCTTCCTATCAAATCCTCGAGATGGCTTCCGACGGCGAAGGAGCATGCATGCAGTGCAAGAAGATTCCTCCTACCGAGGAATCTCTCACGTGCCTCACCTGTGGAACTCCATGGCACGTGCCCTGCCTCTCCTCCCCTCCTGAGTCCCTTGCCTCCACTCTTCAGTGGGAGTGCCCTGACTGCTCCGGAGATTTCGATCCTGTCCCCCAACCCGGTGAAGGATCAGATCTCGTGGCGGCCATTCGTGCGATCGAGTCCGACGTGACTTTGACGGACGAGGATAAGGCTAAGAAGAGGCAGCAGCTTCTGAGCGGTAAAGCCGTCATGGAGGATGATGATGAGGAAGAAGAAGAGAAGAAGAAGAGCTCCTCTATGGGTCTTGATGCTGATATCTTGGCCGCTCTTGGTGAAAACTTGAAATGCTCTTTCTGTCTTCAGTTGCTTGAAAGGCCCGTGACGACGCCATGCGGGCACAATTTCTGTTTGAAATGCTTTGTGAAGTGGACTGAGCAAGGGAAGCGAGAGTGTATAAAATGCCGCTTTGTAGTTCCTAACGATGTGGCAGCGAATCCTCGTATCAACGCTTCCCTTGTGTCTGCTATCCGTCTGG | |||||||||
gi|150125232|gb|EE526204.1|EE526204 37RDBRH_UP_052_F02_05DEC2005_006 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GGTGTAGAGTTTTTCACAAGAACAACAACGAAGTCGACAGAGACAACAACATGAGAAGCTGCTCAAACCAAACTGTTTCTGTGTCGATGGACTCTTACATCAACTTCGACCATCACCACATCATCAACCAGCAAGTGCCCTGCTTCTCCAATTTGAACCAAACCAACCAATCCGGCTTTGTCTCCAAGAACCCCAACCCGTTGTCCAAACCTTCCTCGGATCAGATTGTTCTCAGGGCTGTGCTAAGCCAACTCACTAAGAGTGGCAAAGAATCACAGAGTTACGGAGAAGGAAGTTCAGAGAGCCAATTAACAGACATTGGCATCCCAAACCACAATGCTTGGAAGTATTGATCACTACCAAAAATATATGATTATGCAAATGAATCTATATTGTTCATAACTGAAGACATTATTTATTTACACCTCGTGTAAACTGTTATACAAATAAGGATTAGATAATAACATCCTATCTTATATATTAAAACAGAAGTCACAACCT | |||||||||