| mature miRNA: TTGGATTGAAGGGAGCTCTA species: Brassica rapa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|150904914|gb|ES935372.1|ES935372 38RDBRM_UP_091_G12_19JAN2006_084 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TCTTCCCTCTTCGAATCGAATAACACTTCCTTCAATCCAAAGCAGAGGAGATTCAATCGAGCATCAACCTCTGGGCAAGTCACTACACTAGAGATGGAGAAGGACGCAATGGAAAACAAGCCACGCCGAGTTGTTGTCACTGGCATGGGAGTTGAAACACCACTAGGTCACGACCCTCATACTTTTTATGACAACTTGCTACAAGGCAAAAGTGGTATAAGCCATATAGAGAGTTTCGACTGTTCTGCATTTCCCACTAATCGCTGGGGAGATTAAATCTTTTTCGACCGACGGAT | |||||||||
gi|150126894|gb|EE527866.1|EE527866 38RDBRM_UP_056_E03_07DEC2005_023 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGTGGAGGAGTTTTTGTTCTTTTGCCATCACTTTCTCTCTCTTTATCGTTAGAGAGAGAGAAACAGGTTCGATTGAGATTGATGGGTTTATTAATCGAGGATGATAACGACGGCGGCGAGGTTTTGATTCCGCCGGCGAATTTCTCGATGGTGGAAGACGGAGTTTACCGATCTGGGTTTCCTCAGCTCGAGAATTTCGGTTTCTTATCGACACTCAATCTTAAATCCATCATTTATCTGTGTCCTGAACCATACCCTGAGGAGAATCTAAAGTCTCTTCAATCCAACAACATCAAGCTTTTCCAGTTCGGTATCCAAGGCAAAACGGTATATGGTTTCTTCATTTGCTGATATTCTGTAGACCTTTTTATCATTGAAGAAATTGGATTTAATGAGCTCTTCAGTTGTTGGCTTATATTTAGCTTCATTTTGTCTCATGTCTTGTTCCTGTTGAGTCTTGTCCTGGCTTGTATAGCGTCTTTGAGTTTTCTGAGTTTGGATTGTGTTTTTTTTACGCACCCATAGGATCCTCCAACTCCTATGCCAAAGGATACAGTCTTGAGTGCTCTTAGAGTACTTGTTGGTAAGGAATCAGAAGAGAGATCCTTTGATGTCTTAGTATCTTCTTTCTTTTAGCTCTCTCATATAGTTTCTTTCTTTTGTTGCTTA | |||||||||
gi|83822103|gb|CX270326.1|CX270326 39RDBRT_UP_009_A03_02APR2004_031 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGTTAACAACTGCTCGCTCCATGGATCCCAGGCGAGTTCCCGTAACAACAATGCCTCGTCTTCCCTCTTCGAATCGAATAACACTTCCTTCAATCCAAAGCAGAGGAGATTCAATCGAGCATCAACCTCTGGGCAAGTCACTACACTAGAGATGGAGAAGGACGCAATGGTAAACAAGCCACGCCGAGTTGTTGTCACTGGCATGGGAGTTGAAACACCACTAGGTCACGACCCTCATACTTTTTATGACAACTTGCTACAAGGCAAAAGTGGTATAAGCCATATAGAGAGTTTCGACTGTTCTGCATTTCCCACTAGAATCGCTGGGGAGATTAAATCTTTTTCGACCGACGGATTGGTTGCTCCTAAACTTTCCAAAAGGATGGACAAGTTCATGCTCTACCTTCTAACAGCTGGCAAGAAGGCGTTGGAGGATGGTGGGGTGACTGGGGATGTGATGGCAGAGTTCGACAAATCAAGATGTGGTGTCTTGATTGGCTCAGCAATGGGAGGCATGAAGGTCTTCTACGATGCGCTTGAAGCTTTGAAAATCTCTTACAGGAAGATGAACCCTTTTTGTGTACCTTTTGCCACCACAAACATGGGTTCCGCTATGCTTGCCTTGGATCTGGGATGGATGGGTCCAAACTACTCTATTTNCACCGCATGTGCCACGGGAAAC | |||||||||
gi|150116436|gb|EE517408.1|EE517408 36RDBRG_UP_015_H04_11JUN2004_018 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GACATTCATCCCTCTTTCCTTTTAGTTACCTCTTTTAATTCAAACAAGAAATCACTCTCTCTCTCTCTCTCTCCAAATTTCCATTGATCAAAACCAACCAACGAGAAAAACCTAAAGATCTCAAGAACAATCATAAACTCTCTCATTTTGGATCCTCTGTTTTTCTCAAAATGTCAGTTGTTATTTGTCAAGCGCAAGAAAAAATCGTCACCAAAAATGAAAGAAACGAAAGTTTCACCCAAAAAGGCAAAATGGGTGGGTTGAGTTTCCTTCAATCTATGTCCGATATCACTGCCATTGTCCGAAACGTAGAGGACAAAGCTTATGTTCACCCGGTCGTGGAGCGCTCTGTTTCTAAGCTGAGTGAGAAAAGCTTAGAGATGTGCACTGAGAGCCTCGGGTCCGAAACTGGAAGCGAGAGTGGTGACGAGTTGTTGTTGCTTGCGTTTCAAGCAACCACTACTCCTAGGGTTCCTTCTCCTCAAGAAGGAGAAAAAGACACTGCCAAGAAATCAACGATCAAAAGTTTCCCGCCACCGATAAACTTTGTTAACGGTTCAAAGTATAATCGTGTGGTGAGATCACTAGGAGAAGATGGTCGTGTTGTCGTTCAAGCAATTATGGTTTCGTCTCAGCCTCCTAACTTTGTTGCGGAACGTGGTGAAGGAAGGCTCCGTCTCTGTTTATCACCGGAAAGTTCTTTACGTGGGCACACT | |||||||||
gi|150122224|gb|EE523196.1|EE523196 37RDBRH_UP_013_C03_26MAR2004_027 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GGTCTCAACATAAAAAAAAAAAAAAAAAAAAAACTCACATGCAGTACAAACCCAAAGCCCTCAAGTAAGCAATATATAAACCCTTTGGCCCCCAAACAACTTCCTTCAATCCAAAATGGCGACAGGTTCTCGTGTTCTGATCGGTCTAGCAATGATCCTCATAATCTCAGGAGAACTGCTAGTTCCAGGGCAAGGAACGTGCCAAGGAGACATAGAGGGTCTGATGAGAGAATGTGCGGTCTACGTCCAGCGTCCAGGCCCAAAGGTAAACCCATCCGCAGCGTGTTGCAAAGTCGTCAAGAGATCAGACATCCCCTGCGCATGTGGCCGTATCACACCCTCGGTTCAAAAAATGATAGACATGAATAAGGTTGTTCTTGTCACTTCCTTTTGTGGTAGGCCTCTCGCTCATGGTACCAAGTGTGGAAGCTACATTGTGCCATGAGGTTTGGGACCAGACCTCAAGTGCTAGGGCTTTGTGGAATAAAGTGTTTGTGCTTTGGAGCCTTACTAGTCGCCACTTAAATCTACTCTTGCAATCTCTAATGTATTGATCCAAATAAATGTAATTGAGCTTCAATGTTGTTTAAATTGAATAAACCGGATTAATAAAGTATAATCTTGATTGGCCAAAAAAAAAAA | |||||||||