| mature miRNA: TTCCACAGCTTTCTTGAAC species: Bruguiera gymnorhiza database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|53821366|gb|BP946865.1|BP946865 BP946865 Bg04 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg04-13_O03 5', mRN TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): CTACGGGGTTTGACTTCCTTGCATGGTTTAAAGAAACTGTGGAGTTCGCAGATTTTGTGGTTCTGAAGATGAAAGCAGGGGAAGTAGAACTGAAATTCCTCGAGGGCTTGTTTGAGAGTGGAACCATATGCCATGTTGACGAGCTGTTCCTTAACTGCTCCGATGGTGGAGACGGTAAAAGCTTAGTCAAAGGAGGCTGCCTGGATCTTTTCAAGCGCCTTAGAAGCAGTGGTGTCTTCGTCCATCAGTGGTGGGGAGACTAAATTGAGAGAGGCTATCTATAGATCTAGACTCTGGTTGATGGTCTCTTTCTAGAGTTGTCTTTGTACCTTGTTTTCAATTGATGTTTTATCGCCATCGTTGTTGTTTGTTCTGAAATGCTTCCGTAGGATGTGCCAATGCGGCGGAGACATCCAAAGTTGCCTTTATGGTTGGGCACTCTATAGCTAAATAAGCAACCATTTGTGTTTGTGTTCTGGA | |||||||||
gi|209513102|gb|GE338311.1|GE338311 hzjkab0_001039.z1.scf cDNA library of Bruguiera gymnorrhiza Bruguiera gymnorhiza cDNA, mRNA TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): GGGGGCATTCTATGGAGTGTATTCGGAATACTGCTGCATAAGGACTTCAAAAGTGATGCCAGTAAAGCCGAGCTGTGGCTGGCTTGCATGGTTGCAGCTCCGGGGGTGTGGATTAGGTGGTTCCTAGCACGACTAAATGGGCGTGGACTGGGGAAGGTCGAACATCTGAAATGGTTCCCATTTGGTACTTTCATTGCCAATGTTTCTGCTGCTTGCGTCATGGCAGCACTGGCTACGTTGAAGAAAGCTGTGAACACCGAGCCATGCACTGTCGTTTCTACAGGCTTGCAATTGGGATTTGCGGGTTGTCTGAGTACCGTTTCAACATTCATTGCTGAGTACCACGCAATGGAGGGAGGTCCTAAAAGTTGGAGGGCTTATGTGTACGCCTTCACATCACTAATCG | |||||||||
gi|53827606|gb|BP953105.1|BP953105 BP953105 Bg05 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg05-24_H14 5', mRN TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): AATGCTGTTCGTAATACAGAAACGGAGGAGTTGGATCCATCTGTGGAAGATGAAGGGTTTGACTTCCTTGCATGGTTTAAAGAAACTGTGGAGTTCGCAGATTTTGTGGTTCTGAAGATGAAAGCAGGGGAAGTAGAACTGAAATTCCTCGAGGGCTTGTTTGAGAGTGGAACCATATGCCATGTTGACGAGCTGTTCCTTAACTGCTCCGATGGTGGAGACGGTAAAAGCTTAGTCAAAGGAGGCTGCCTGGATCTTTTCAAGCGCCTTAGAAGCAGTGGTGTCTTCGTCCATCAGTGGTGGGGAGACTAAATTGAGAGAGGCTATCTATAGATCTAGACTCTGGTTGATGGTCTCTTTCTAGAGTTGTCTTTGTACCTTGTTTTCAATTGATGTTTTATCGCCATCGTTGTTGTTTGTTCTGAAATGCTTCCGTAGGATGTGCCAATGCGGCGGAGACATCCAAAGTTGCCTTTATGGTTGGGCACTCTATAGCTAAATAAGCAACCATTTGTGTTTGTGTTCTGGAATAAATTTG | |||||||||
gi|53815039|gb|BP940538.1|BP940538 BP940538 Bg01 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg01-08_B05 5', mRN TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): GTCATGCTATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGAAAACATGGCAATTCAGGATTTCTTCAGTTAATTGACCTTTTCTCCTTTTTCAAATCTCTTTAGTTTTCTACTTGCTTGCTCTTGTGGACAAGATCGATCCTTCTCCTGCTTCATC | |||||||||
gi|53814583|gb|BP940082.1|BP940082 BP940082 Bg01 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg01-06_J19 5', mRN TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): TGCCAAGAAGCTTGCTTCCTTGGCAGATCTATATGTGAATGATGCATTTGGGACAGCCCATAGAGCACATGCCTCAACCGAGGGAGTCACAAAGTTCTTGAAGCCATCTGTTGCTGGTTTCCTTTTGCAAAAGGAGCTGGATTACCTTGTTGGGGCAGTTGCAAACCCAAAGAGGCCATTTGCTGCTATTGTGGGTGGTTCAAAGGTCTCATCCAAGATTGGAGTCATCGAGTCTCTCTTAGAAAAGTGTGATATCCTCCTTTTGGGTGGAGGGATGATTTTCACTTTTTATAAAGCACAAGGCCTATCAGTGGGTTCATCCCTTGTTGAGGAAGACAAGCTTGACCTGGCAACATCGTTACTTGAGAAGGCCAAGGCAAAGGGAGTGTCTCTTTTGTTACCCACTGACGTGGTAATTGCAGACAAGTTTGCTCCTGATGCAAACAGCAAGGTTGTACCAGCATCAGCTATCCCTGATGGGTGGATGGGACTGGATATTGGACCAGATTCTATTAAGACATTCAATGAAGCTTTGGAAACCACCAAAACTGTCATCTGGAATGGACCAATGGGCGTGTTTGAGTTTGACAAGTTTGCAGTTGGAACAGTGGCTGTAG | |||||||||
gi|53815693|gb|BP941192.1|BP941192 BP941192 Bg02 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg02-03_G20 5', mRN TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): GAGACCATCAAGGAAGCTGTGGAGAGGGAATGCCCTGGTGTTGTTTCCTGTGCTGACATCCTTGTGCTCTCTGCTAGAGATGGCATTGTTGCGCTAGGTGGCCCCTTCATCCCTCTGAAAACTGGAAGGAGAGATGGCAGGAAGAGCAGAGCAGATGTGCTTGAGGAATACCTCCCAGATCACAATGAAAGCATTTCTGTTGTTCTCGACAGATTTGCCTCCATGGGCATTGACACTCCTGGAGTGGTTGCCTTGCTAGGAGCTCACAGTGTTGGTAGAACCCATTGTGTGAAGTTGGTGCACCGTTTGTACCCAGAGGTTGACCCAGTGCTAAACCCTGACCATGTTGAGCACATGCTTCACAAGTGCCCCGATGCACTTCCAGACCCCAAGGCTGTGCAATATGTGAGGAATGA | |||||||||
gi|124544079|gb|DB994993.1|DB994993 DB994993 Bg05 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg05-12_K23 5', mR TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): GAGACACAGAGGAGGAGGAGGAGGAGGCATAAATAAACCGAAGCAGAGAGGAGGAGCAGAAGAGAGAGCAAAGCCGACAGCCCCCACCGAGCCTACGCTACAGACACTTGCCATTCCAGTCGAGAAACACAGAAACAGAGGCAAAACCACAAAGAAACACGGGCGATGCTGCTTTTAGAGCGGCTAGCGAGAGCGCCTCGCCGAGATGACGCCCGTTCCCATCATCATATCCTAAAACCCTAAACTCTGGGCTCGCAACTTGTCGTCCAGTCACTCGCCTCCAGACTCTATTACACCTGTTTCCTCTCAGTTGATGAGAAATTCAGCAGCTGCTCTTGGCCCCCGCCTCTAACTCTGGCCGCCCTGCTTGTTATTCGCAAGCTTTATAAGTTGCTGCCGTGTTGATTGCAGTTCTCACGATTCCAGTATCCTATGCCACTGCCCAATTGTCGTAAGTTTCCCTGAAACCCTCCTTTGCCTTCTCCCAATCCTTCTTCAAGGTGATGGGACCCTGGAAAGGTTTCCCCAAAAAAAAACCGTAGCGGATTTGAGATTCGCTACAAAACCCAAAGGATTAGGATTTGGTTTTTATTCGGCGTTTTAGCGGTTGTGGCCCAGAAGCCTAAAGGGTCACTGTTAAAAATTCCAAGTGCCCCCTTGCCTGTTGAGGGTCCCACAATTTTATTCTAAAACTTTTGGGTTCAAAAACCTGTGGAATCAAGGGTTTTAGGACCTAAATGGGTGATTCTCCACATTTTTTCTATCGGATGTTTGGGGAA | |||||||||
gi|53825750|gb|BP951249.1|BP951249 BP951249 Bg05 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg05-17_G06 5', mRN TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): GATACCTACTACACAACCTACGCTATACAAACCCTCTGCTCCTCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTTTGGGCTTAGCTTGCCCGTCAATTCTCTGTGATTTCTTGTCTCTAGGGTTTTATGGGAAGGAGGATTTGGATCTTCAGAGAAAAATCAAATCTTTGTTGATTTTTCTATTATGGGTTTTTGACAAATGAGTGAATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTGTGGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAGGGAAGTTCTGATCTGCATCCGGTTCCCTATCTATTGGTTATTTGATAGCTATTCTGTTCAGTTAGTTGCTTTATTGCTTAATTAATGTATTGGATCCGTTTGATTTCTGATTTACTAATCGTTCTATAGTCATCAGCGTTCAACCCACCA | |||||||||
gi|124543288|gb|DB993053.1|DB993053 DB993053 Bg04 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg04-11_F23 5', mR TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): GCTTAGTTATCCACAACTTAAGCCCGATCATTTCCCATGTATTTAGATTTAGGCCCACTAACTCTAACCGCTCACCATTTCGGGGGGGGTGGGGGGGGGGATAATCTCGTGGCCTACTCTAAGCAGGCTGTACTCTGAATTTTTCAGGTTTTTTCGACTAGGCCACCCAATATATTGCATTATACATGGGGGTCTAAAAATTGCTGCCAACTAATGTAGCCAATGTCCTTTACTGGCAGCGGATGAACCCGGGTTCCGAACGTTGACGGACGGCTTCCTGGTAGCCTGGAGGTGGGCCCGATGCTTCTAAAATTGCAAATGAACTCTCTAGGATGGGCGGGGGGGGCGTTATCGCATCTATTAGAAATATTTTTGCACCGTGAAAAGTTGCGCAATGAAAAGTGCCCCAATTATCGCTGTTTTCCTTAAACAAAGGGAAGGCTACTAAGGCCGGTCTTTTTTTCGCAGAAAAACTCGCCCTTTTTAAGCCGCGGGCTCGAGCCGGGTTTAAAAAACCAAAAACTTTAGAGTCCGGCGCGGGGCTCACCTTGTTTGAGAAATAAAACGCGACTCGAAAAAACGCCTGTTTTTTTAAGGGTACAAGATTTTTGTGAAAAGGTGGTTTAAAAAAGCTGTGGTAAAGACTTTTAGCAAAGGGGGCTGCAATAAAAGCGCGGAAGGGCCTAAAAAAGTGGGGCGGACCACCGTGTTGGGAATTTCGCCCTTTGTAAAAAAATATTGGTAGGTTACCAGCAAATTTGTTTTTATAGGGTTAAAAACAAGCCGGGGCGCTTTAATACGGGGATGGTATAAAATTGCCGCCAGCTTTTCCGCCGGAAAAGA | |||||||||
gi|53814871|gb|BP940370.1|BP940370 BP940370 Bg01 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg01-07_I11 5', mRN TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): CGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAAGGAAAGTTCTGTTGCGTCAACAACCATCGAATTGGATATCATCTGTTGGTTCTTCTTGATTGGTATTCTGTTCAAAATTGCTTGCTTTATTATTTGATTAATATCTTTGATTCACTGATTTTTGATTGTCTAATTGTAAGTTCTATTTCCTATTTACTCATTAGTTGCATGATTTATGTGGCCATCGCAGCTTCTGGCTTAAAATGGCTTCCTGCAGGTATTTCTATTTTAGTCTGACACGATGGATGGATCATAGATGCAAGTTCTTATCTTCTTTCAAATTTTTATTCATTATATCATTGATGACTTGACTGTGTTCAATTTTTGTCATCTTTTGGGGTCTAACAGATCACAGCTGTTACTTCGAGCTGCC | |||||||||
gi|209513406|gb|GE337943.1|GE337943 hzjkab0_000444.z1.scf cDNA library of Bruguiera gymnorrhiza Bruguiera gymnorhiza cDNA, mRNA TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): GGGGTAAGCGTGGAGGGCAGACAGAAAAATGGGTGCCAGAATAATCTTCTTCTTTGCCTTGTTATCCTTCTCAGCCTTGTCTCTCAGGCCAGCGTTTGGGGACAATGAGGAGGGAGACACAGGTCTTATTATGAACTTTTACAAGGACACATGCCCTCAAGCTGAGGACATTATCAAAGAACAAGTTAAACTTCTCTACAAGAGGCACAAGAACACCGCTTTTTCATGGTTGAGAAACATCTTCCATGACTGTGCTGTTCAGTCTTGCGATGCCTCCCTGCTGCTGGACTCAACAAGGAGGGTCTTGTCTGAGAAGGAGACAGACAGGAGCTTTGGAATGAGGAACTTCAGGTACGTTGAGACCATCAAGGAAGCTGTGGAGAGGGAATGCCCTGGTGTTGTTTCCTGTGCTGACATCCTTGTGCTCTCTGCTAAAAATGGCATTGTTGCGC | |||||||||
gi|53822970|gb|BP948469.1|BP948469 BP948469 Bg04 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg04-22_G14 5', mRN TTCCACAGCTTTCTTGAAC EST sequence (targeted fragment marked with yellow): GAAACCAGTTCGATCTGTCTCTGAAACTCTGACGTAAAAGACACAGAAAGAACAAGCTGTCTCCATTTTCACCATTTCCGAGGTCCGACCAAACCTCTCTTTCCCCCCACGGATCTAAGCGAGTCGCCATGGCCATGATCGATGAGCCTCTATACCCAATTGCTGTGCTCATTGATGAGCTCAAAAATGATGATATTCAGCTCCGTCTGAACTCAATCCGACGGCTTTCCACAATCGCCCGTGCCCTTGGAGAGGAAAGGACCCGGAAGGAGTTGATTCCCTTCTTGAGTGAGAACAATGACGATGATGATGAAGTGCTCCTTGCGATGGCTGAAGAGTTGGGGGTCTTTATTCCTTATGTGGGTGGAGTGGAGCACGCCAATGTGTTGCTTCCACCGTTGGAGACTCTGTGCACTGTGGAGGAGACTTGCGTGAGGGAGAAAGCTGTGGAATCACTGTGTAGAATTGGAGCACAGATGAGGGAGCAAGATTTAGTTGAGTTTTTTATTCCACTAGTGAAGAGACTGGCAGCTGGTGAATGGT | |||||||||