miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTCCACAGCTTTCTTGAACTG
species: Bruguiera gymnorhiza
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|53814871|gb|BP940370.1|BP940370 BP940370 Bg01 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg01-07_I11 5', mRN

TTCCACAGCTTTCTTGAACTG
|.|||||||||| ||||||.|
AGGGTGTCGAAATAACTTGGC

EST sequence (targeted fragment marked with yellow):
CGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAAGGAAAGTTCTGTTGCGTCAACAACCATCGAATTGGATATCATCTGTTGGTTCTTCTTGATTGGTATTCTGTTCAAAATTGCTTGCTTTATTATTTGATTAATATCTTTGATTCACTGATTTTTGATTGTCTAATTGTAAGTTCTATTTCCTATTTACTCATTAGTTGCATGATTTATGTGGCCATCGCAGCTTCTGGCTTAAAATGGCTTCCTGCAGGTATTTCTATTTTAGTCTGACACGATGGATGGATCATAGATGCAAGTTCTTATCTTCTTTCAAATTTTTATTCATTATATCATTGATGACTTGACTGTGTTCAATTTTTGTCATCTTTTGGGGTCTAACAGATCACAGCTGTTACTTCGAGCTGCC



gi|124543288|gb|DB993053.1|DB993053 DB993053 Bg04 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg04-11_F23 5', mR

TTCCACAGCTTTCTTGAACTG
| |||||||||| ||.|||..
ATGGTGTCGAAAAAATTTGGT

EST sequence (targeted fragment marked with yellow):
GCTTAGTTATCCACAACTTAAGCCCGATCATTTCCCATGTATTTAGATTTAGGCCCACTAACTCTAACCGCTCACCATTTCGGGGGGGGTGGGGGGGGGGATAATCTCGTGGCCTACTCTAAGCAGGCTGTACTCTGAATTTTTCAGGTTTTTTCGACTAGGCCACCCAATATATTGCATTATACATGGGGGTCTAAAAATTGCTGCCAACTAATGTAGCCAATGTCCTTTACTGGCAGCGGATGAACCCGGGTTCCGAACGTTGACGGACGGCTTCCTGGTAGCCTGGAGGTGGGCCCGATGCTTCTAAAATTGCAAATGAACTCTCTAGGATGGGCGGGGGGGGCGTTATCGCATCTATTAGAAATATTTTTGCACCGTGAAAAGTTGCGCAATGAAAAGTGCCCCAATTATCGCTGTTTTCCTTAAACAAAGGGAAGGCTACTAAGGCCGGTCTTTTTTTCGCAGAAAAACTCGCCCTTTTTAAGCCGCGGGCTCGAGCCGGGTTTAAAAAACCAAAAACTTTAGAGTCCGGCGCGGGGCTCACCTTGTTTGAGAAATAAAACGCGACTCGAAAAAACGCCTGTTTTTTTAAGGGTACAAGATTTTTGTGAAAAGGTGGTTTAAAAAAGCTGTGGTAAAGACTTTTAGCAAAGGGGGCTGCAATAAAAGCGCGGAAGGGCCTAAAAAAGTGGGGCGGACCACCGTGTTGGGAATTTCGCCCTTTGTAAAAAAATATTGGTAGGTTACCAGCAAATTTGTTTTTATAGGGTTAAAAACAAGCCGGGGCGCTTTAATACGGGGATGGTATAAAATTGCCGCCAGCTTTTCCGCCGGAAAAGA



gi|53815039|gb|BP940538.1|BP940538 BP940538 Bg01 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg01-08_B05 5', mRN

TTCCACAGCTTTCTTGAACTG
|.||||||||||||||| ||
AGGGTGTCGAAAGAACTCGAA

EST sequence (targeted fragment marked with yellow):
GTCATGCTATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGAAAACATGGCAATTCAGGATTTCTTCAGTTAATTGACCTTTTCTCCTTTTTCAAATCTCTTTAGTTTTCTACTTGCTTGCTCTTGTGGACAAGATCGATCCTTCTCCTGCTTCATC



gi|53825750|gb|BP951249.1|BP951249 BP951249 Bg05 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg05-17_G06 5', mRN

TTCCACAGCTTTCTTGAACTG
|.|||||||||| ||||||.|
AGGGTGTCGAAATAACTTGGC

EST sequence (targeted fragment marked with yellow):
GATACCTACTACACAACCTACGCTATACAAACCCTCTGCTCCTCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTTTGGGCTTAGCTTGCCCGTCAATTCTCTGTGATTTCTTGTCTCTAGGGTTTTATGGGAAGGAGGATTTGGATCTTCAGAGAAAAATCAAATCTTTGTTGATTTTTCTATTATGGGTTTTTGACAAATGAGTGAATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTGTGGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAGGGAAGTTCTGATCTGCATCCGGTTCCCTATCTATTGGTTATTTGATAGCTATTCTGTTCAGTTAGTTGCTTTATTGCTTAATTAATGTATTGGATCCGTTTGATTTCTGATTTACTAATCGTTCTATAGTCATCAGCGTTCAACCCACCA