miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTCCACAGCTTTCTTGAACTT
species: Bruguiera gymnorhiza
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|53815039|gb|BP940538.1|BP940538 BP940538 Bg01 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg01-08_B05 5', mRN 

TTCCACAGCTTTCTTGAACTT
|.||||||||||||||| |||
AGGGTGTCGAAAGAACTCGAA

EST sequence (targeted fragment marked with yellow):
GTCATGCTATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGAAAACATGGCAATTCAGGATTTCTTCAGTTAATTGACCTTTTCTCCTTTTTCAAATCTCTTTAGTTTTCTACTTGCTTGCTCTTGTGGACAAGATCGATCCTTCTCCTGCTTCATC


gi|53814871|gb|BP940370.1|BP940370 BP940370 Bg01 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg01-07_I11 5', mRN 

TTCCACAGCTTTCTTGAACTT
|.|||||||||| ||||||.
AGGGTGTCGAAATAACTTGGC

EST sequence (targeted fragment marked with yellow):
CGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAAGGAAAGTTCTGTTGCGTCAACAACCATCGAATTGGATATCATCTGTTGGTTCTTCTTGATTGGTATTCTGTTCAAAATTGCTTGCTTTATTATTTGATTAATATCTTTGATTCACTGATTTTTGATTGTCTAATTGTAAGTTCTATTTCCTATTTACTCATTAGTTGCATGATTTATGTGGCCATCGCAGCTTCTGGCTTAAAATGGCTTCCTGCAGGTATTTCTATTTTAGTCTGACACGATGGATGGATCATAGATGCAAGTTCTTATCTTCTTTCAAATTTTTATTCATTATATCATTGATGACTTGACTGTGTTCAATTTTTGTCATCTTTTGGGGTCTAACAGATCACAGCTGTTACTTCGAGCTGCC


gi|53825750|gb|BP951249.1|BP951249 BP951249 Bg05 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg05-17_G06 5', mRN 

TTCCACAGCTTTCTTGAACTT
|.|||||||||| ||||||.
AGGGTGTCGAAATAACTTGGC

EST sequence (targeted fragment marked with yellow):
GATACCTACTACACAACCTACGCTATACAAACCCTCTGCTCCTCCTTTTATCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTTTGGGCTTAGCTTGCCCGTCAATTCTCTGTGATTTCTTGTCTCTAGGGTTTTATGGGAAGGAGGATTTGGATCTTCAGAGAAAAATCAAATCTTTGTTGATTTTTCTATTATGGGTTTTTGACAAATGAGTGAATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTGTGGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAGGGAAGTTCTGATCTGCATCCGGTTCCCTATCTATTGGTTATTTGATAGCTATTCTGTTCAGTTAGTTGCTTTATTGCTTAATTAATGTATTGGATCCGTTTGATTTCTGATTTACTAATCGTTCTATAGTCATCAGCGTTCAACCCACCA