miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTGACAGAAGATAGAGAGCAC
species: Bruguiera gymnorhiza
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|53819313|gb|BP944812.1|BP944812 BP944812 Bg04 Burma mangrove cDNA library Bruguiera gymnorhiza cDNA clone Bg04-02_N09 5', mRN

TTGACAGAAGATAGAGAGCAC
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AATTGTTTTCTATTTCTCTTT

EST sequence (targeted fragment marked with yellow):
GGTGGTCTATTATAGCTCAAACAAGGCCATCACCTTCGCTATACTTCCATCTTTCATCTCTGAGCTGAACTCTCTGCTGGGCTTCCCTTGTCTTCCTCAATCTTATCACCTTTTTTCTCTTTATCTTTTGTTAAACTCCTGCAAGGAGCTGTACAGTTGAGAACCCACCTCAGGAATTTTCCTTGATATAGGAGATTTTGGAGGAAATAATTGCTAGAAAAAATACAAAATAATAATAATTCAAGATGAAACACTGTGTGATTCAACAAAGCGCTTTTTCGACGCGGGAAGAGATGCCCAGATCTGCTACTGATTCCTTGTTGGGTCGCAGAGATCCGGTGGTTTGTCCCAAGCCCAGGCGCCTCGGGATCTTGAGCGCCGCCGCTGCCACCGACCTCCACCCTGCCCGCTCTCTCAGATTGCAGCCCAGCAGCCACCAGGTGGAGCATTGTGATTCAAAAG