| mature miRNA: ATTGCTTCATCATCATCGTCG species: Capsicum annuum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|25038304|gb|CA524230.1|CA524230 KS12034E11 KS12 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): TTCAAGTCGAAATCAGTATCTCTTAGGATCACGAGTTTATTTTACACCTTCCTTTGCCTGCTACTATACAAGTAAAAGAATGTTAAGTATGTTCTCAAAAAAACTTTAAGTTTACCTCCTTTTTTCCTGGAATTTTTTTATGGATGGACCCTTCCTCCCCTTTTGTTTGCCAGAATCCGCTGCAGAGTCCAGAGCTTCCAATGCTTCAGGAACGAATGTCAGATGCAGGCGATAGAGGCAAAATTGGTACTACGACTCCGAAAAAGTTGGTTCAGCCATTGTACAGTTCAATGCCGCCTCCGCCACCTCCTAGAATGATGTCTCCACCACCACCACCACCACCAAAGTTCCAATCATCCTCACAGAAAGTGCATGACAACAATGTGGTTAATAAAGCTCCATGTGAAACTGTTCCGGATACTTTAGTCCAGCTAATGGAATATGGGGATGACCACCATGATGATGAAGCAATTGGCAGACCTTTGAGAAGTACCTCAAGTG | |||||||||
gi|22784911|gb|BM064793.1|BM064793 KS01071D07 KS01 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): TCGAGTTTTTTTTTTTTTTTTTTTAGCACAAACACAAATACATTAAATGAAATTCAACTGCTGTCTCAGAATACATAATAAAACACATCACACAATATAAACACAGAGTACAGACAAACTTGGCAGTGACCTCCAGAGACCAAAGTAAAAAAACATAATCAAACGTCAAACCATTAACACCACAATGGACAAACTCACTCCCCAGAACTCACACCTCTGAAAGTGAGTACCATAGAAAATAAAAGACACGGCAGAAATAAAAGCAGCATGAAATCCCATTAGATTCACGCACAAACTCCTTTGCAAGGTTCGACAGAAAGGAGGTTCAAATGCGTTTGGAAATGGGCATCTCCAAAATGTAGACAACCATCTCCTTCCCAGTCTGAGAATGGTGAAGGAGACCAAAAAGCTTAGGGGTTTGTCATCTCAGACAGAAAGGTGCCTGCAATCAGGCACAACACGATGGTAGCTGTCATCAAACAAAAAACATTATGTTCTGCAGATCAGGGTGCAAATCATAAAATCTTTGTTCGAATGAGGCAGTTGATGAAGATGATGATGATGAAGCAGCATAGGATGAAGTTGTAGACCCCGGAGAGTGCATCTCCATAAGCACCTCTTGGAACATCCGTCCCCTGTAGGCAACAAGGTCTGCATAATAAACT | |||||||||
gi|224639431|gb|GD130471.1|GD130471 KS26008A06 KS26 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): GCACGAGGTGTCAATGACCTCGTTGAAAGGTGCAGATGCTAAAGAAATTAGCTCTTCTGTTTCTGCAATTGCAAATGAGAAGATTAAAGCAGAAAAAGAAGCCCATGCGAGTAAAAAGAAGACGGGTGCAAAGAAGAAGCAGCTGCATGTTGACAAGGAAGATGATGAAGCAGTGGTAAATGCATATGATGGTTATGACGATTATGATTTCATGTGAGGGGGGGAATTTGGCAAACACATGCATGTTATAGGCTGGCCTTTTCACCTTTCTAGTTTATACCTGTCTGGCAAATCTTTTGGATTTACAAGTGACAACTATGAGGAAGATCCTGTCGTCTGTTGCCTCCCAATTCTGGAGTCTTACTGAGTGTGTCATATCTTTTTCTTTTTTCTTTTGGGGTCAAATAAAAGAGCAACTTTTGTTTTGTTTTTATTTTGTGGTCAGTTACTGGTTGGTGATCCGTTAGTAAATTATTTGTCGGTTGATCTGCCTTCTCTTGTATGATGCGGGTCTCAGATTTTGAACCTATAGATTTCCTGTAACTG | |||||||||
gi|224666614|gb|GD101247.1|GD101247 KS21022N07 KS21 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): GCCTTCTAATCACCTCTTCCATCAGCTTCCACATCTCTTACCATGTCGGATCATCAAAACCCTAAACCCACCGACAACCTACCTCCACCGCCGTCAACAAATCCACCCAAAATCTCCACCGCCACCTCCTCCGGCCCCGGCGCTCCCCACTTTCCAAATCCACCAGACCGTACAAATCCAGACGTTGCAACACTAAGAGAGCAATGGAGGTTCGCTATAAAGCAGTACAGCAAATGGTATTCCCATGCTTGGGGAACTGCAATTTTAGCTGGGCTTTCTTTTTACGCACTTGGTTGGATTATCAAAGGCGGAAATCCTTTGCCCTCTTTTAAACACGAAGAAGAATCCGATAGTAAAATTGCATCTTCTAATGGTGTTCCCGAGGTTAAGAGAAGTTGATGATGATGAAGAAATAAATTTTCCGGTGGTCTCCATTTTCTAAACTCGCATGACCATCGAATCCAGATGCTGCAACACCAGGAGAGCAATGGAGGTTCGCGATAAAGCAATACAACAAATGGTATTCCCACGCTTGGGGAACTGCTATATTAGCTGTAATACCCCGAACTTTCTTTAAGTCAAATCTAGTCTCTAGAAGAGTTAGTGATGAATTCCTAAATGATTATTGTTTAAATTAGATAGAATTTTTTTC | |||||||||
gi|224691862|gb|GD088626.1|GD088626 KS19014B01 KS19 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): GCACGAGGACGATGCAGAAAAGAAGAGAGAGGAGGAGGAATCAAAGGCTGCTCCAGCTGATTCTGACGCCGAGGATGATGATGAGGCTGATTCAGATGATGCTGATGATGCTGATGACAAGTCTGAGTCCAAGGATGATGATGAAGCAGCACATGATGAACTGTAAGGGCTAAGCATTTTGATTCAAGCTGACAAAAGAAGCTTCCCGGAAGATTTCCTCCCCCCACTCTCTCCCTTCCCCCTTTCTTTTTTTCCTTTTTATTAGTGAATTAGCCCCTTTCCATTTTTAGTGAAAAGACCCAGATTGAGGGTGCATGAAGTCGTGTATGGCTGATTGCTTTGATGTCATTGGGACTCGGCCAATAGGAATACATGTTTCGTTTTGACTAGAATTTTACTTAATTATGTTGAAATTACTATCTAAATTTTCTATTTGTCTTGCTCCTTGGCTCTAATTCAACGTGACAAGTAAATTAATTGGAT | |||||||||
gi|51301452|gb|CO911149.1|CO911149 BJ03015E07 BJ03 Capsicum annuum cDNA 5', mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): ATGACAAGTCTGAGTCCAAGGATGATGATGAAGCAGCACATGATGAACTGTAAGGGCTAAGCATTTTGATTCAAGCTGACAAAAGAAGCTTCCCGGAAGATTTCCTCCCCCCACTCTCTCCCTTCCCCCTTTCTTTTTTTCCTTTTTATTAGTGAATTAGCCCCTTTCCATTTTTAGTGAAAAGACCCAGATTGAGGGTGCATGAAGTCGTGTATGGCTGATTGCTTTGATGTCATTGGGACTCGGCCAATAGGAATACATGTTTCGTTTTGACTAGAATTTTACTTAATTATGTTGAAATTACTATCTAAATTTTCTATTTGTCTTGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|224692293|gb|GD091325.1|GD091325 KS19043H02 KS19 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): GCACGAGGCGGTGAAGGTGATGATGATGATGATGATGAACCGGATGAAGATGATGACGAGGAAGAAGGCGGCCCTGAAGGAGAGGAAGAAACTGTTGAAGAAGAGGACGATGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGATGAGGATGAAGAAGCAATTCAGCCACCAAAGAAGAGGAAGAAGTAAATTATCCCATAACAGGCTAAATCTCCTTCACACACACGTGTGTGAATCACTATGAGGTCTCTTCTGTTAGACACTCTACTTTGTTATCTTAATGCACCATTAGAGTACTTAAAAACGTATTCTAAGGCTCAGTAACTGAAGTAAGAAACGTATTCAGCCACAAACAGAAAGATATGAAATTGAGGCAATCTCCAGTTTGCATGA | |||||||||
gi|90823509|gb|EB084446.1|EB084446 1699 CM334 Root cDNA Capsicum annuum cDNA clone RR11-29, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): AGCACGAGGGTTTTAGCCCTCTCTTCTCCCACAACACTGATGAATGTAGAAAAGTTGCAAAAGATGGCTGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAGAAAGAAGAAGGCCGTACACAAAACAACTACAACCGATGACAAAAGACTACAGAGCACTTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCATTAACCCCAAAGTTCAAGCATCATTTGCTGCAAACACTTGGTTTGTTAGCGGTCTCCCCCAGACAAAGAAATTGCAGGATATCCTTCCTCAGATTATTCACCAGCTGGGTCCTGATAATTTGGAGAACTTGAAAATTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGTGCTGCTGCCGGTACAGATGCGGCTGTAGGTGCTGCTGCAGCACAGCAGATGATGATGATGAACCAAACTTGTGGGGGGGAGAAACTTTTGAAGCTGCTGCTGAGGAGGGCGCGCTTCCTGAAGTTTTGTTGAATTGCTTTACTTTCAGGGTCTGCTTTTAAGTGTTCTATTTCATGTCTGTTGGACCCATCTCAAAAAA | |||||||||
gi|224693746|gb|GD133600.1|GD133600 KS26043C08 KS26 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): GCACGAGGTCAAGATATTTTCACTTATCATACAAGGTTGCGACATGAACAGAGCTGCAGATTTCGACCATACAATTGTCCATATGCAGGATCTGAATGCGCTGTTACTGGTGATATTCAGTACCTCGTTGCACACCTAAAAGATGATCACAAGGTTGATATGCATGATGGGTGTACCTTCAATCATCGTTATGTCAAGTCTAATCCTCAAGAAGTTGAGAATGCTACATGGATGTTGACAGTTTTCAACTGTTTTGGTCACCAATTCTGTCTGCATTTTGAAGCTTTCAACCTTGGTTTGGCACCAGTGTACATGGCATTCCTTCGCTTTATGGGCGATGATGATGATGCAAAGAGATTTAGTTATAGTCTTGAAGTAGGTGGATTTGGCAGAAAGGTAACGTGGCAAGGAGTTCCAAGGAGTATCCGTGATAGTCACAAAACTGTCCGAGATAGTTTAGACGGGCTGATTATTCAAAGGAGCATGGCACTCTTCTTCTCTGGCGGTGATAGGAAGGAGCTGAAGCTAAAGGTAGCTGGGCGTATTTGGCGAGAGCCATTGTAAACTAGATATATGCATCTTCTTTCATCGTGGGGATGCCCAGAAAGTATAGTTAGTTAATCGCTAA | |||||||||
gi|25034160|gb|CA520139.1|CA520139 KS11007E11 KS11 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): GTCAGTTGCTGAGGAAACATGGGGAAAGCAGAAGGATGCGGAAAAGGCTGCTTTTGAAGAAGCAGAAAAGAAGAGAGAGGAGGAGGAATCAAAGGCTGCTCCAGCTGATTCTGACGCCGAGGATGATGATGAGGCTGATTCAGATGATGCTGATGATGCTGATGACAAGTCTGAGTCCAAGGATGATGATGAAGCAGCACATGATGAACTGTAAGGGCTAAGCATTTCGATTCAAGCTGACAAAAGAAGCTTCCCGGAAGATTTCCTCCCCCCACTCTCTCCCTTCCCCCTTTCTTTTTTTCCTTTTTATTAGTGAATTAGCCCCTTTCCATTTTTAGTGAAAAGACCCAGATTGAGGGTGCATGAAGTNGTGTATGGGTGATTGCTTTGATGTCATTGGGACTCGGCCAATAGGAATACAT | |||||||||
gi|22786046|gb|BM065928.1|BM065928 KS07008H11 KS07 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): TTGATGATCCTGAGGATAAGAAGCCAGAGGGCTATGATGACATTCCAGAAGAGATAACTGATCCTGATGCCAAGAAGCCAGAGGACTGGGATGATGAAGAAGATGGTGAATGGACAGCCCCAACCATTCCTAACCCGGAGTACAAGGGCCCATGGAAGGCAAAGAAAATTAAGAACCCCAACTACAAGGGGAAGTGGAAGGCTCCTATGATTGATAACCCAGAGTTCAAGGATGACCCAGATCTCTATGTTTTCCCAAAATTGAAGTATGTGGGAGTTGAATTGTGGCAAGTGAAATCTGGAACCTTGTTTGACAATGTTGTCATAACCGATGATCCAGAGTATGCCAAGTCAGTTGCTGAGGAAACATGGGGAAAGCAGAAGGATGCGGAAAAGGCTGCTTTTGAAGAAGCACAAAAGAAGAGAGAGGAGGAGGAATCAAAGGCTGCTCCAGCTGATTCTGACGCCGAGGATGATGATGAGGCTGATTCACATGATGCTGATGATGCTGATGACAAGTCTGAGTCCAACGATGATGATGAAGCAGCACATGATGAAC | |||||||||
gi|224694744|gb|GD135520.1|GD135520 KS26064F05 KS26 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): GCACGAGGCTAAGGTCATCTTTTTAGATTCAAGAAAGCACCACAATCACTTGTATTTCACTCTTTCATTTTTCTTTTGTCACTTCGTTGCCACTTTTTTGTCTTCATTACAGAAACCCCTTTTTTGCAAAATAGAATCTTTAGGTTGTTATGGATGAAGACAGAATTGGGTTAGTACTGGGTAGAATTTCTGAGTTGAGGGTAGAGATAACAAATTGCATTCAGAAAGCATCAATAAATTCCAAGAAAGATGAGGTAGTGGAATCTGGAAATGGGGAAGACATAAATGAGGATGTTGATGATGAAGCAGTGGATTGCTTGTTGAAGATTAAGGATGCTCTTGAATCACTTGAAGCCCAAGTTTCTTCTTTGCAGGCACTACAAGAGCAACAATGGTATGAGAAAGAGGCAGCGCTGTCTGAGATAGGTTATAGTCAAGAAAAATTGCTCCAAACACTGAAAGGGTACGAAGGCAAGGATTACCAAGTCATACACGAGGCAATTGCTTTTGTTTCTGGAACAGTAGAAGACCACAATGATCTTCTACTTCCTCCTTACCCAAGCAGACCTTCTCGTACCTTGGTGTCAGACAAAGGTAATGGTGCACACTTGCCATCTGCACG | |||||||||
gi|224682574|gb|GD081473.1|GD081473 KS17064B02 KS17 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): GCACGAGGGCCGGAACTAATGGAGAATGAGGAAGCTCAGCTCAAGCCAGCTGAATGTACAAGGACAATTATTGAGGTAAATAGCAAAGCAACACTCATGTTTTCAAGTGCAATCAGTGATGTAATGCATGCAAACGTTTTCTGGCCAGATTTGCCTTACACGACTGATGAACTTGGAAATGTCTACTTCCAAGTAAAGAATGATGAAGATGTTCTGAAAAATCCGACAACTGAAGAAAACGTTGTGCAAGTAATTATTGGCCTAGATACATCAGAAATGCAGAGTGAGATGGAGTCATCAGGTCAATCCGAAATTGATTTTCTAGATGAATTTGATGATGAGGATATTGATATTGATATTGATATTGATGATGATGACGACATTGACGATGACGGCGACGATGATGAAGCGGATTGGGTTTCTGTTCTTGATGATGAAGAAGATCAGAGTGGGCATCCTGACTTGGAAGATTGGGCTACATTAGAGACGATGAAATCTTCTCATCCAATACACTTTGCCAAACAAATTAGTGAGGTTGTGACAGGTGATCCTATAGATTTTATGGATCAGCCTCCAGCAGGTCTTGTTATTCAGGGCCTTCTAAGACCAGCTTTCCTTGAAGAGAACACTACCATACCAAAGCAGATATCTGAACATAAATTAAATGATGCTGGTATACACCTAATGGAAGAAGTTGCAGAACATAAGCAAAACGGT | |||||||||
gi|110352239|gb|EC911923.1|EC911923 2973 CM334 Root cDNA Capsicum annuum cDNA clone RR08-32, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): TACACAAGTTAGTCATATTCTGCGGTAGTGGAGTTTGCCCTTCTGAATGTAATTTACTCTATGAAACCTGATGCATATGTCTTCCTTTTGTTGGAAGGCTAATACATTAATAAACAACCACAAGAATCCATCAGAAGGACCAAGGATGGAGAGAGATGAACAAGCATCCACTACTATGCAGTAGCTACTGTGTCGAGGATGATGAAGCACTAGCTTGCAGTAGTGCCATTAACCGAACTTCCCCAGATCCACTTTCTTCTTTATGGCCCTTTGACTGTGGTAAATACATGCGTCTACTATTCCAGCAACTGTGAAGACACCTCCAATAATTGCACAAACATTAGTGAGAAAATGGAAGAACGACACATGCTCCTCTGCAAAAGTCACCTTGATTGGAGAGAGATCATAAAAGAAGTAAACTCCAGTAATTGTTTGGAAAAGCCCCATCTCTGAACTCTTGAAATGTTCGGTCACTGAGAACTGATTTGAATCAATGGTACGGCCTCTAACACCTTTATATATTGTAGGGACCACTTTGAGAAAGTACTGATACATTCCACTTTGTGCTTCCTGCGTCCATTGAACCCCATCAAGTGGATTTACAACTCCAGGAATAGAGTCGCCAAAAGCTAACTTATTTACCCTGTGACTAATATTATAATGATCCGGTTGTAAGGTAACCAATTCGAAGAGTTGAAAGGTTGACTGGTGAAAGCTTTTGCCTGCGGAAAGTGAAAATTTCCAGCCACTTTATTGA | |||||||||
gi|224627708|gb|GD056136.1|GD056136 KS13051B05 KS13 Capsicum annuum cDNA, mRNA sequence ATTGCTTCATCATCATCGTCG EST sequence (targeted fragment marked with yellow): GAAAAATGGCAATGATGATGAAGCAAGGGCTTCTTATAGGAAGTTCTTGTCCTCATTTTCTCTCACCCAAAATTCCCTCTTTCAAACAACCCATTTTTCACCTTACCAACAAATGTAGAGAAGAAGAAAAAGAAGTTCTCTTTGTTCAGAAAAAAATCAAGAAATTTTTGGCTATTGATTTTAAGGAAGTCTTGCAGTTTAGGCATTCCGCGGCAACAGTAATCATGGCTAATGCATTGATGATGACTTCGCCTTTAGATGCTTTAGCTGAAACTTGTGAAGCTGATAACTCACCCTTGAACATGCTCTTCAACATGCCGTTACTGCTGTTTGTTGCGCTTATTGGGGCTACCGTTGGAGGATTAGTAGCACGTCAGCGAAAAGCAGAATTGCAGCGGTTGAATGAACAGCTCCGCCAGATCAATGCTGCTTTACGAAGGCAAGCCAAGATTGAGTCTTATGCACCTAACTTAAGTTACGCGCCTGCCGGTGGAGAGTGCGAACTGAGTAT | |||||||||