| mature miRNA: TGACAGAAGAGAGAGAGCAC species: Capsicum annuum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|224676613|gb|GD066403.1|GD066403 KS15032F07 KS15 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGAACACTCTCTCCACTCTCTTCTTACTCTCTCCTAATCTCCGTTTCTCTCTCATCCTCAAATCGCCAGAGCTCCGGCCAACATGCATAGACAATCACTCGGCTCACCGGCGTCCAAATTACACCTCGCACATGGCGGCATAGTCATCGTCGGCGGCAGAGACGACTCCTCCGCCGCCGTCATCACGGCGGCGGCAGAAGCATCTCCGTCGTCACTCTCAAACGACTATAATGAAGAAGAAGATGAACAAGTACGCAAGTCAGTTAAGGCACTTAATAAGTCATTGTCCAGAGCTGAGAAGTACATTCACATTATTCCGATTCTCACTTTGTTCTGCTTCTTCATCCTCTTTCTCTTCTCTCATAATCCGTCTGATAAAGATTTAGCTCAATTTCACGGATTTGAAGGTTTCGTTAAGCTTAAAGAATCGTCACAGAGAGTATTAGATATCGAAAAGGACGATGTTTTAGCGATCCGAAGCGTAAGGAACTTGCAAGAAATTGATAAAAAGGCTACAAAACATCGGCGGCTCCACCGGAAACTCGCCGAATTTTAGGCCGCTGTTTCTGCTTCTTACTCTTCATGGCGTCGGTGGAGCTTTCTCACGTGCGTAACTTGGTCCCTTACATATTTTACCCTTTTTTTACTTTGAACAAAAGTATTACCACACGTGTGTGCAT | |||||||||
gi|224691381|gb|GD062496.1|GD062496 KS14055B03 KS14 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CAAAAATGTCTAAAATATCACCAACTCCAAAATCTTCAAGAAACATAAATGGGGAACTTTTGATCACAAGTCTCCTTTCTTGAAAAGGCTAAGTACATTGCAAATGTAAAAGGCTGGTGAATTAACTAATTGGTCCTTCAAACATCAATTGAGGAGGATACCGACGATTTCACTTCTTCTTTTCACCACCTCCAGTAGCCCTCATCTTACGGAGAACACTAGACATCTCTTCTCTCTTCTTCTTCGCCCTCTTGTGAGTACCCAACTTCCTCTTGGCTACCTTCAAGGCACGCTTGTCCTTTCCAACTTTAAGAAGCTCAGTAATCCTCTTCTCATATGGAGCAAATCCAGCAACTTCTCTGATAAGGCTCCTCACAAAGTGGATTCTTTTGCTTGTTTTCCCTTTTCTGTCAGAAGGGCGTGGAGCTAATTCCTTCTTGGTTACAATGTGGCCTTTGTTTAGCCCAACTGATAACCCTGTATTTGGCTGCTTTGGAGCCATCACCTCTTCAATTTGTTCGATGTACAACACTCCCCTCGTGCCGAATTCGGCACGAGGGAAACTTTGCATTGTAGCTTTAATTACTTACCACTATCATCAACAAAACAAACATGACCACCACATCTGCTGCGGTGCTGAATGGCTTGAGCTCCTCTTTCTTGACTGGTGGCAAGAAAAG | |||||||||
gi|224689664|gb|GD081136.1|GD081136 KS17060E05 KS17 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGAAATCCATCAGCAGCGACCTGAACAATAAAATCCCTAGAAACAATAGGCGATTCAACCCCATCAGAAATCGACAAAAAATCTAATCCCCAGTTCAAACTATTTCAGTAGTGACCCAAACCTGAACAAGTTTGTTTTTGCCCAAAAGTCTCCATTTTGCTCGAATTTGTACATCCTCATATGAATATCATGATTTGTTATTCAAATCACTCTCGAATTCTCTAGGAACATAGTTAGGTGTCTTCATTCAAAGTCTACCTATACAAATCTTGGGATAATTCATATAATTTCATACACAGTTGGGTGATTTTTATTGGTTCTTGAGTATAATTTGTTTTGATCAAAAGACATTAGTCCACCCATTTCGAAAAGAGGTGAAAAATCCAAAATGGAGTACCATTTTGCTGATGAAAACCGAAGCAGGGGATGGAAATTTCAAATTTCAAAATCTCCTTTGAAAATCCCCAATTTACCCTCAATTCGTCTTCTATATAAAGACCCTTGGGGTCACTATTTTTGGGGGTCTTTTTTCTCTTCTTTCAGGGGGTTTTTGGTTTGGAAATTGGAGTTGGAGATTCTAGAGTTGAAACTAGGTTTCAAAATTTTGGGTTGAAAATTTTGGGGGTTTTCAGAAAAACT | |||||||||
gi|224692196|gb|GD072215.1|GD072215 KS16030A04 KS16 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TTTTTTTTTAACTGAAATGAAGACACTTGAAAATAGAGCAAAAGTCACAATCTTAAACAAAATTCAAACCCATAGTTCGTCACCGAGTCTTAAGAGAATTTCATAGCTAAACCAAAAAGATAATGTATAACTAATGAAATCAGTTCCTCAATCATCAAAATGAGGGGAAAAAGGCTTCACTTCTTCTTTTCGGCACCTCCAGTGGCCCTCATCTTACGGAGAACGCTAGACATCTCCTCTCTCTTCTTCTTTGCCCTCTTGTGAGTACCCAACTTTCTCTTGGCTACCTTCAATGCACGCTTGTCTTTGCCAACTTTAAGAAGCTCAGTAATCCTCTTCTCATATGGAGCAAATCCAGCAACTTCTCTGATGAGACTCCTGACGAAGTGGATTCTCTTGCTTGTTTTCCCTTTTCTGTCAGAAGGGCGTGGAGCTAGCTCCTTCTTGGTAACAATGTGGGAACCTGTTAATACTGCTAAAGCTATTGCTAGTTGGGGTGTGGATTACATTGTCTTAACTAGTGTTGATCGTGACGATATACCTGATGGAGGGAGTGGCCACTTTGCTGAAACAGTCAAAGCCATGAAGTTGCTCAAGCCTGATATCATGGTCGAGTGCTTAACTTCTGATTTCCGTGGTGATCTAAGTGCCGTGTCTACTCTAGTTCACTCTG | |||||||||
gi|25016881|gb|CA516324.1|CA516324 KS09056D11 KS09 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCTCGAGGGTCGCAGGAGGCTCTCCGATCACAATGCACGGCGCCGCAAACCTCAGCAAGAAACTATCCAGTTCAATTCAGCGAGGCTTTCTTCATTGTTTTATGGTAACAGCCAACCTATGAATTTCATACTCAACCACGCACAACTCATTCACTCCAGAGCTGCTGCAAACTCTACCTGGGAGAGGACTCAAGACTCTAAATTCAGTATAACAAGAGGGTTTACTCCAAAGGCTGAAAGAACTGGCAGCACAAATGGGAAGTCGCTACTGGAGGGGATTCAGTTTTCAGGGGGTGTGGGTGCACAGAGTAATGCATCTAGCTTGTTCTTGCCCTCCAAGGGCACCACAGCCGAGGTTTCCCATCAAGGTGCCAAGGAATCCACGTTCAATATGGTTATAGGACCGGAATTTCCTCGTGCTCTCTCTCTTCTGTCAACTAATTCCTGGGGTTCATCTGAGCCTGAGACTGTTTCACTGCGCCCTGCAAATCAGACCAGCATGCCCGAG | |||||||||
gi|51297248|gb|CO906945.1|CO906945 BJ02010F06 BJ02 Capsicum annuum cDNA 5', mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATTTTCAGAAAGTTGAAAAGATTTTCTCTCTCTTCTTTCAGCTTTCTCTCAAATGGACTAGGGTTTTCCTTCAATTGTTTCATCAATTTTTGCTCGATCTCAACTTCAACATGGTATCAAAGCAGGTTTACCGGTAGATCCACGGCAGCTCTTTCGACTGATATTACCCTTGTACGGAGTTTTTCAATTTTCAGTGAAGGAAGATTCTACCTTAGTGACGTTTTTGTTGAACAAGACCTCATCTTCTTCAGATTTAAGAAGAAGAATGGTAATTTCCTTCCATATGACTCCTTTATGTAGAATCGACTGGGGATTATGCTTGTGATTGTTCGATTTTTTTGAATCTGCATTTTATTTTTGAATACTGGGTATAATCGTCTTCATTATAGTCTTCTCTGCTATGTCGAATGCTCAGCATAGTAGTACCACAGTACCTTCGACCACAAATAGTGGTTTTGATGAATTTACTCTGGACTCGTCGCATCCTTATTACATTCATCCATCTGA | |||||||||
gi|224626287|gb|GD081145.1|GD081145 KS17060F02 KS17 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGGATTTTCTCTCTCTTCTTTCAGCTTTCTCTCAAATGGACTAGGGTTTTCCTTCAATTGTTTCATCAATTTTTGCTCGATCTCAACTTCAACATGGTATCAAAGCAGGTTTACCGGTAGATCCACGGCAGCTCTTTCGACTGATATTACCCTTGTACGGAGTTTTTCAATTTTCAGTGAAGGAAGATTCTACCTTAGTGACGTTTTTGTTGAACAAGACCTCATCTTCTTCAGATTTAAGAAGAAGAATGGCAGCTCTTCACATAGCTCAGAATCCAGTTTTTCATGAACGCACCAAGCATATTGAGATTGATTGCCATTATGTTCGTCAATGTCTTAATGTCGGGCTCATTTCTCTCCACTTCGTTCCTTCTGCTGCTCAGCTAGCTGATTTCTTCACCAAATCACTTCCTGGCCCTGCTCATCATGCCATTCTCAGCAAGCTTGGCGTGTGCACACCCTCCAGCTTAAAGGGGGGGTTGGAGTAACGTAGTCCAAACTTGTATATACAATTTTTCATTTAGTATCAATGCCTTGTAAATAATGTGATCAAATTAGCATTGTATAGTCTGGGCCCGTCATTCATGTACAATATTAATAGGACTGACCCAGCCCAATAACAACGTGTATGTATAGGTTAAAGCCCATTACT | |||||||||
gi|224675840|gb|GD100955.1|GD100955 KS21019J18 KS21 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CTGAAATTTTATTCGGGCATGTATTTCATTTGAAATAAATAACGTTGGAACAAAATAAGAGGAATGAAGCATCACTTGCTTTCTTTGACATTGTTATTGTACTGGAATAGTTGTGTCCTTTGGTTGAAAGATGGGCGATCTCACAGCCAATATGACAAATTCTCACAACTTTGAAATAGAATAGTCCAATGCATCAACAAGAAAGTCTGCATCATCCTTGCTGAAACACATGGGAGGCTTTATTCTGAAAACATTTCCATGTAAACCGCCTTTCCCTACTAGAACACCAAGATCTTTAAGCTTCTCAAAGAGAATTCCAGTTTCCGCCTTGGCAGGTGTCTTTTCTTTTCTGTCGGTTACCAGTTCGATGCCAACCATTAAACCCCTGCCTCTCACATCTCCAATTATGTCGTGTCTTTTCTCTAGATCCCTCAGCCCACCAAGCAAGTGTGAGCCAACCTCGGCACAATGCTTCTGGCGTTGTTCCTTCTCAATAACTTTGAGTACTGCATGTCCACCAGCAGAGCAA | |||||||||
gi|224642296|gb|GD061550.1|GD061550 KS14045A07 KS14 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGGTCGTAAACGTCTTGATGGACATAACAGACGTCGAAGGAAGCCTCAGCCAGATTCTATGGCCAAAAATTCTGGATTACTGAATGGCCAACAAGGAACGAAGCTCCTGTCATTTAGCAGTCAACAGATATTTCCAAGCGCAGTTGTGAGCTCTACATGGGCTGGTGTTGTCAAAACGGACAGCGATATGGTGTTATACAACAACAAATCACATATAAATTGCATGGACAGTCAAAACTCATTCGCTCATTCTTCGGCTCATAGCTATAAAGGAGGAAGCCAACTCCAGTTCTTGCAAGGCATTGGTCGTAGTCTCCCTGAAGCTTCTTCAATCTGCCCGCCACTTCTTGATCATCCCACTTCTGCAGCAGGAATTTCTAGCAGCGGACAAAAGATCTTCTGCAGTGGATTAAGTGAAGTTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCGGCACCCGCTGTAACTAGGGAGATTGGTCTGAGTAACATGGTGCAGCAGCCTGCCTCTATCCCCTGTCCCCGGTCACATGGCCTGCACTATGGTGGTCTAAGCCATTTCCCATTTGCTCAAGATTTCAATAGCAATCCTCAAGATTCACATGTTAGCAACAGCAGCAGTCCTCTCCATTTCCATGAAATGTTACAAAATGCACAAGATGGGTCATCTACAAGTGATGG | |||||||||
gi|22787902|gb|BM067782.1|BM067782 KS08011C01 KS08 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): CGGCCGCTTTTTTTTACTTCTCTCCCTCTGCTCCCTTTTTGTCCCCCTCCCTTGCTTGTTTTCCCTTTTCTGTCAGAAGGGCGTGGAGCTAGCTCCTTCTTGGTAACAATGTGTCCTTTGTTCAATCCCACTGCTAATCCTGAGCGGCCGC | |||||||||
gi|224636242|gb|GD121859.1|GD121859 KS24043D10 KS24 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCCACAAACAGCCCAAAGTTTAGGCCCTTCCGACTTGGAGTATTCGCATTTGGCTCTCTCTCTTCAGTCACTTCTCGTCGCCGTCCAGCTCCTCAATGGCGGCAGCATCAAGAAGCCTCATGTCCCATCTCCGGACTCTCTTATCATCCACTGTTTCAGAAACCCACTTCAGAGCATTCAGTGCTTGCAGTAGTCAAGTGGAGGAATTGAAGACTCGGGTTATTGAAGGAAAACCTGGAATCATGACTCCAAACTCCAAAAGGACTGGAGCTATTGCTATCAAATGTGGAATGACAGCTCTATGGGACAAATGGGGGGAGCGCGTTCCCATTACCATTCTTTGGTTGGATGATAATATTGTTTCCCAGGTCAAAACTCCCGAGAAAGAAGGCATTTGCGCCCTACAGATTGGATGTGCTCACAAAAAGGAGAAGCATTTGACCAAACCTGAAGTTGGTCATTTTAGAGCACAAGGTGTGCCCATGAAGAGAAAGTTGAAGGAATTTCCTGTTACTGAAGATGCCCTTCTTCCTGTTGGAACGAGCATCAGTGTTCATCATTTTGTTCCGGGCCAGTATGTGGATGTTACTGGAATTACAAGAGGGAAAGGTTT | |||||||||
gi|22785044|gb|BM064926.1|BM064926 KS01072H11 KS01 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGGGGAAATTTCTGTAGGGCAAAACTCCTCTTGTGCTCCCTCTCTTCTGTCAACAGGCATTTCATCAACTCTGCCTTGGATGGTTCAAGGAAACCATAATGCCTACATTAAAGGTGATCATCTTAATCTTGTGAAATCTGCCAGAGTTGGTGTTACAAGTAGTTCAACACCAATCGAGTTATATTCATCTGAAGTAGTTGAGCAAGACGGGGTCGTTGTTCAAGTTCCTGGTAGTGAGGCTGTTTCATTTGGAATTCAGAGAGATCACGGACATGGTCAAAGATCGAGCGCTATAATTTCCAAGAATTGCCTTTCTCCAGAAGGTGGACCTACCATGGATTTAGTGCAGTTGTCTTCGCACCTACAAAGGGTGGAGCAGCAGAAAAATTCTGTCCAAGTGAAGCAGGAAAATGATATCTTTTGTGCTTTTACTTCCACTTGATACAAGTCTGAAGGGTCAACATCCAAATG | |||||||||
gi|224690481|gb|GD121377.1|GD121377 KS24038B04 KS24 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): TCAGATGCGTATGCAGGAAACAAAGGGTATTTAATAGCATCCAACAGAAATATTCAGAATGCACTTGTTAACGTAAATGATAGCTAGCACACAGTAAGTACAAGGATTATTCAAGTTTAATCTGAATCAGAATCATGTCTTCTTCTCTTCTCCTTGTCTTTCGTATGTTTCCTCCTGTCATATGAATCGCGTGTATGCTTCCTCTTACCGTCTGAATCACGGGAATGTTTCCTCCTATCATCTGAATCACGGGGCTGTTTCCTCCAATCATCTGTGCCCTGCAAATGTTGTTTCTCTCTTCTCTCATCCTTTTCCCGTCTCTTCTCTTCTCGCCTCCTCTTCTTTTCGTTCCTTTCAGCGTCTGACTCTTCTTCATTCTGTATGGGTGGAGCAACGATCACACTTGCATTAATCTTTTCTACAGGCTCATCGATCGGGTTAGATGGAAAAGCCGCTGGTAAACTTGGTTCTTCCCACGGTTTGGGCAATTTTGAGAAACCAAGACCATCTACCCGAGCAGCTTCAGAATGCCCTGCTCCCAAGTCTTCTGCAGTCGAACCTCTCTTCACAAGTTCAGAAAACTCATGCTTGTCTAGCCGAGTACCTTGAGGACGTGTGGCACGCTTGGGAGCTAAGCCCAGAGCCTCCCTCATTGCCTGCTCCTCCTCTTCTTTAATCTTACGTATT | |||||||||
gi|224670715|gb|GD107784.1|GD107784 KS22030D07 KS22 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGAAGGTTATGAAGAAAGAATAAAAGAAAGAGGAATTATTGTAAGAGATTGGGCACCTCAGTTGGAAATACTGGCACATCCTTCCACAGGTGGTTTTATGAGTCATTGCGGATGGAACTCATGCATGGAAAGTATTTCAATGGGAGTTCCAATAGCAGCCTGGCCAATGCATTCTGATCAGCCAAGGAATTCTCAGTTGGTAACAAAGTTCCTAAAAATCGGCCTAATTGTGAGGCATTGGGAACGTCGAGATGAGCTGGTTACATCAGAAATAGTTGAAAATTCTGTAAGAACTTTGATGGGATCACCTGCTGGGGATGAGATGAGGAAGAGAGCGTCAGAATTAAGTGTTATTGTCAAACAATCAGTCATGGATGGGGGAGGTAAAAGTACGGAGATGGATTCTTTTATCGCACATATTACTCGATAACTGTCTCTTGCGAATTGAAAAATTGGTTGTACACTACCATCTTGTTAGCATAAGTGGTAGGAGGGTTTGGAGGTCGCGAATTAGAGTAGAACGTTAGTTGGTAGTTCTCTCGCTTTTCTGTTAGGTAGGATAGGTGGTGGTATAGGTATTTACTCTCTTACCAGCAGTATTAGCACTATTTTCATAGTTTCTTGTTCGTCGATTGTTTTTATCATTTGTGTTTCCTGTGCTTCCATTA | |||||||||
gi|22784665|gb|BM064547.1|BM064547 KS01068E04 KS01 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGAGAGCAC EST sequence (targeted fragment marked with yellow): ATTTCTCAACAAATTCGTACGAATAGTATACAGCTCACTCTCTTATCCTTTTTTCAAAATCCCAAAATTACCCCGGATTTGAATTCATTCAACACCATTAAATCTTGAAACGAACCCTAGCTCATTCTCTATATAAAGACGATTTTAGGAGCAAACAAGAAGGGGGTGGGAATTTAGGGTTCGAAAATTTTGGGTTGGGAAATTCAGGTTGAAAATTTTGGGGGTCGAAAAATTGTTAGTCTCAAAAGAGAGGAAAATTTCCTTGTTTCTACGGAGGTTGGGAAACTCTCAAGTTAAGAATTTTAGGGATTTTTTTTTTGGGGCTTTGAAAATTGGGAGTTCGAGATTGGAGGGTTCGGAATTTTGGGCTGAGAAAATTCTGTGGGGTCTTTTTTCTCTTCTTTCAGAAGGATTTTCTTTTGGATTGGAAATCCTAAGGTTCGAAAGATTCAAAAATTGGAAGCTCTTTGGAGGTTCGAAAATTGTCTGAGAAAGCTAGGAGGAAAACTTTCTTTGGGGGTTTGAAAAAATTCTCGGATTAGAAAATTTGGAGTCTTCATTAAAACTGAGAGTTCAAGAGTAGAGAATTTTTTTTCATCGGTTCTGAAAGACTGATTTGAAAGAAACTGCTACGAGGTTTCTAGTTTCTCAGTGGTGGTCAGAATCCTATCATCAGCT | |||||||||