| mature miRNA: TGACAGAAGAGAGGGAGCAC species: Capsicum annuum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|28151094|gb|CB164968.1|CB164968 KS06015527 KS06 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): TTCGAGCGGCCGCCCGGGCAGGTACTCATGATGATGCTAGGAAGAAAGATCACCATGCTGAGGGACAACAACAGCTTCATCGTTCTGGTAGCTCTAGTTCCAGCTCTTCAGAGGATGATGGGCAAGGTGGGAGGAGGAAGAAGAATAAGGGTGTAAAGGAGAAGATTAAGGAGACGTTGACCGGAGGCAGTCATGATGACAAGAAGGGAACAGGTGATCAACAACATGCTGCACACACAACGACTACTACTACAACAACTGGTTCTGTTGGAAATGAAGAAGAAGAGAAGAAAGGAATGATGGACAAAATCAAGGACAAGATCCCTGGCATGCACTGAACTCTTCTATCTCACCACCTTGAGTTGAAGCCAATAGTCTTGTTAAGAAGTCTACGTGTTTTTGCACTTAATGTTATGCATTGAATGAACCGTGAGGAATGGGTTTCTGTTGAGAATTGGGTGGCATTAAGGTCATAAAGCATGGTGTTTCCACTTTTCTGTCGGGTGTATATATGGGCCCATGCCTGCGCCCTTCCATAAGAAGCAAATATGTTCCTTGGTCGGGACCACGCTA | |||||||||
gi|224636242|gb|GD121859.1|GD121859 KS24043D10 KS24 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): GCCACAAACAGCCCAAAGTTTAGGCCCTTCCGACTTGGAGTATTCGCATTTGGCTCTCTCTCTTCAGTCACTTCTCGTCGCCGTCCAGCTCCTCAATGGCGGCAGCATCAAGAAGCCTCATGTCCCATCTCCGGACTCTCTTATCATCCACTGTTTCAGAAACCCACTTCAGAGCATTCAGTGCTTGCAGTAGTCAAGTGGAGGAATTGAAGACTCGGGTTATTGAAGGAAAACCTGGAATCATGACTCCAAACTCCAAAAGGACTGGAGCTATTGCTATCAAATGTGGAATGACAGCTCTATGGGACAAATGGGGGGAGCGCGTTCCCATTACCATTCTTTGGTTGGATGATAATATTGTTTCCCAGGTCAAAACTCCCGAGAAAGAAGGCATTTGCGCCCTACAGATTGGATGTGCTCACAAAAAGGAGAAGCATTTGACCAAACCTGAAGTTGGTCATTTTAGAGCACAAGGTGTGCCCATGAAGAGAAAGTTGAAGGAATTTCCTGTTACTGAAGATGCCCTTCTTCCTGTTGGAACGAGCATCAGTGTTCATCATTTTGTTCCGGGCCAGTATGTGGATGTTACTGGAATTACAAGAGGGAAAGGTTT | |||||||||
gi|224642296|gb|GD061550.1|GD061550 KS14045A07 KS14 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGGTCGTAAACGTCTTGATGGACATAACAGACGTCGAAGGAAGCCTCAGCCAGATTCTATGGCCAAAAATTCTGGATTACTGAATGGCCAACAAGGAACGAAGCTCCTGTCATTTAGCAGTCAACAGATATTTCCAAGCGCAGTTGTGAGCTCTACATGGGCTGGTGTTGTCAAAACGGACAGCGATATGGTGTTATACAACAACAAATCACATATAAATTGCATGGACAGTCAAAACTCATTCGCTCATTCTTCGGCTCATAGCTATAAAGGAGGAAGCCAACTCCAGTTCTTGCAAGGCATTGGTCGTAGTCTCCCTGAAGCTTCTTCAATCTGCCCGCCACTTCTTGATCATCCCACTTCTGCAGCAGGAATTTCTAGCAGCGGACAAAAGATCTTCTGCAGTGGATTAAGTGAAGTTGATTCTGATCGTGCTCTCTCTCTTCTGTCATCGGCACCCGCTGTAACTAGGGAGATTGGTCTGAGTAACATGGTGCAGCAGCCTGCCTCTATCCCCTGTCCCCGGTCACATGGCCTGCACTATGGTGGTCTAAGCCATTTCCCATTTGCTCAAGATTTCAATAGCAATCCTCAAGATTCACATGTTAGCAACAGCAGCAGTCCTCTCCATTTCCATGAAATGTTACAAAATGCACAAGATGGGTCATCTACAAGTGATGG | |||||||||
gi|25016881|gb|CA516324.1|CA516324 KS09056D11 KS09 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): GCTCGAGGGTCGCAGGAGGCTCTCCGATCACAATGCACGGCGCCGCAAACCTCAGCAAGAAACTATCCAGTTCAATTCAGCGAGGCTTTCTTCATTGTTTTATGGTAACAGCCAACCTATGAATTTCATACTCAACCACGCACAACTCATTCACTCCAGAGCTGCTGCAAACTCTACCTGGGAGAGGACTCAAGACTCTAAATTCAGTATAACAAGAGGGTTTACTCCAAAGGCTGAAAGAACTGGCAGCACAAATGGGAAGTCGCTACTGGAGGGGATTCAGTTTTCAGGGGGTGTGGGTGCACAGAGTAATGCATCTAGCTTGTTCTTGCCCTCCAAGGGCACCACAGCCGAGGTTTCCCATCAAGGTGCCAAGGAATCCACGTTCAATATGGTTATAGGACCGGAATTTCCTCGTGCTCTCTCTCTTCTGTCAACTAATTCCTGGGGTTCATCTGAGCCTGAGACTGTTTCACTGCGCCCTGCAAATCAGACCAGCATGCCCGAG | |||||||||
gi|224633464|gb|GD078456.1|GD078456 KS17032A09 KS17 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTTTGTTCCTTCTTTACTCACTCTCATACAATGGCTTCCCTCTCTTCTCTCAATCCCATTCTTTGCCATACTCTCCTGTTTACCTCTCATTATTTTAAATTTTCCTCTTTACCCCTCCCATCCCCAAATTTCCCATCAAAGACTGATCTACCCACATCGA | |||||||||
gi|224628917|gb|GD071672.1|GD071672 KS16024C07 KS16 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGTGAAAATAAGCGAGTGGGATAGAGGAAGTATCTGGAATATTCTTTTCTTTTCTACAAAAGATTTAGTACTACCATTATACAAGGGAGGGTTTTGAGATTCATGCTTACCATGTAAAGAAATTTGCTTGAGGATCAAATACGTGCCATTGTCTCCCTCTGTCTGATCTCCGTGTTGTGTTCTCCATTGATGTACTAATAAGCATACAAAAAGAGCAATCGACTAAGCAAAAACAAATTTTGGTTGGTGTGTCTTCTCTTCTGTCCGGGTGGTTGATACTTTAGTTCCACTAGCAGAGATGTTCAGTTATGTTAGTACCTTGCGGGGAATTACAAAAGGCCGTGCATCGTAAGTTATGCAATTAACCAAGTTTGATGTTGTCCCTCAACACATTCAAAACAGCAGCAGCTTAGTCAGTTAGCTTTGAGATATTGGATCCACGAACTTAAGAATAGGTATTTACTCGACAAAGATGTCAAGGCTGGCGCGATATTCTTTCTGTACGAGTATGAAACACTGATGGAGAATAGTTGATATTGGTTATAAATTAGTTGTGTCTAATCTGGTTGAATTCTGTAAGCTTGGGCTCTAAGTGACAACAATGTGTACATGCATTTAAAGGTATATCTCATCCAAAGAAACTTCAATTTCTTAGGACTGTTGAGTGTGGGGATTCACCTTACTATATGAACAATTTT | |||||||||
gi|224635835|gb|GD097460.1|GD097460 KS20045C08 KS20 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGCTCCGCTCTATTGGGAAATGGGTTTATGACATGGATCCATTTGAACCATTGAAGTATCAGAAACCTTTGGAGGCCCTGAAAGCCAGGATAGCTAAGGAAGGTTCCAAAGCTGTTTTTGCTCCTTTAATGGCCGAATACATCTTGAAAAATCCTCACCGTGTAACGGTTGAGATGCAGCCTGACCCAGAGAAGGCATCTCGTGAGGAACAAATAGAAAAAGAAACATTGGATAAAGTTAAAGCAAGCATGACCCAAGAAGATCTTGCTGAGCTGGCTCGGGCAACACATGAACTACGTTTAAAGCAAGAAACTCCTGACCCACCAGAAGCTCTAAAGAGTGTGCCCAGCCTCTCTCTACAAGATATCCCTCGAGAACCTGTACTAGTTCCAACTGAGATTGGAGACATCAATGGGGTAAAAGTTTTGCGACACGACCTTTTCACAAATGATGTTCTTTATGCTGAAGTTGTCTTCAATATGAGCTCATTGAAGCAAGAGCTTCTACCCTTGGTCCCACTTTTCTGTCAGTCTCTGCTGGAGATGGGCACAAAGGATTTAGACTTTGTGCAGTTGAACCAGTTGATTGGAAGGAAAACTGGAGGAATATCAGTCTATCCTTTCACCTCATCTGTGCGTGGCAAGGTGGATCCATGTAGCAAGATAATTGTTCGAGGCAAAGCCATGTCACAACGTACAGAAGATCTATTTTACTTGATCAACCGCGTGCTTCAAGATGTCCAGCTAGA | |||||||||
gi|224622711|gb|GD122547.1|GD122547 KS24050G09 KS24 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGCAAATACGTGCCATTATCTCCCTCTTTCTCATCTCCGTGCTGTCTTCTCCATCGATGTACTAATAAGTAAGCATACAAAAAGAGCAATCGATTTTGGTTGGTGTGTCTTCTCTTCTGTCCGGATCCAAATCAAGAATGGAAAGAGGAAGGGGAAGGTGGGTTTCTTCAGTTTCACGTGGGATGCTACCTTTATTAGGGCTGCATACAGTGATTGAATATAGCAGGCTGGAGAGAAAACCACCGGTTACAGCAGCGCTTCTTGCTGCTAATACAATTATATACTTGAGGCCCACTTTTCTTCATCCTATACTTCCTACCATCAATCAAGTCTTGTTTAATCCCCATCTCATCCTTAAGTACAAGGACCTGAGGCGATTCTTCCTATCAGCATTCTACCATTTGAATGAACCTCACCTATTCTACAATATGCTATCACTTCTGTGGAAGGGGATTCAGTTGGAGACATCAATGGGAAGCGCAGAATTTTCATTGACAGTTGCAACCTTAGTTGCTATGTCCCAGGGTGTCACAATATTGCTTGCGAAATCAATCCTGCTGTTGTTTGACTATGAGAGACCCTACTATCAGGAATATTCTGTGGGGTTTTCTGGTGTCCTCTTTGCTATGAAAGTTATTCTCAAT | |||||||||
gi|224670715|gb|GD107784.1|GD107784 KS22030D07 KS22 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): GCACGAGGAAGGTTATGAAGAAAGAATAAAAGAAAGAGGAATTATTGTAAGAGATTGGGCACCTCAGTTGGAAATACTGGCACATCCTTCCACAGGTGGTTTTATGAGTCATTGCGGATGGAACTCATGCATGGAAAGTATTTCAATGGGAGTTCCAATAGCAGCCTGGCCAATGCATTCTGATCAGCCAAGGAATTCTCAGTTGGTAACAAAGTTCCTAAAAATCGGCCTAATTGTGAGGCATTGGGAACGTCGAGATGAGCTGGTTACATCAGAAATAGTTGAAAATTCTGTAAGAACTTTGATGGGATCACCTGCTGGGGATGAGATGAGGAAGAGAGCGTCAGAATTAAGTGTTATTGTCAAACAATCAGTCATGGATGGGGGAGGTAAAAGTACGGAGATGGATTCTTTTATCGCACATATTACTCGATAACTGTCTCTTGCGAATTGAAAAATTGGTTGTACACTACCATCTTGTTAGCATAAGTGGTAGGAGGGTTTGGAGGTCGCGAATTAGAGTAGAACGTTAGTTGGTAGTTCTCTCGCTTTTCTGTTAGGTAGGATAGGTGGTGGTATAGGTATTTACTCTCTTACCAGCAGTATTAGCACTATTTTCATAGTTTCTTGTTCGTCGATTGTTTTTATCATTTGTGTTTCCTGTGCTTCCATTA | |||||||||
gi|22785044|gb|BM064926.1|BM064926 KS01072H11 KS01 Capsicum annuum cDNA, mRNA sequence TGACAGAAGAGAGGGAGCAC EST sequence (targeted fragment marked with yellow): GCACGGGGAAATTTCTGTAGGGCAAAACTCCTCTTGTGCTCCCTCTCTTCTGTCAACAGGCATTTCATCAACTCTGCCTTGGATGGTTCAAGGAAACCATAATGCCTACATTAAAGGTGATCATCTTAATCTTGTGAAATCTGCCAGAGTTGGTGTTACAAGTAGTTCAACACCAATCGAGTTATATTCATCTGAAGTAGTTGAGCAAGACGGGGTCGTTGTTCAAGTTCCTGGTAGTGAGGCTGTTTCATTTGGAATTCAGAGAGATCACGGACATGGTCAAAGATCGAGCGCTATAATTTCCAAGAATTGCCTTTCTCCAGAAGGTGGACCTACCATGGATTTAGTGCAGTTGTCTTCGCACCTACAAAGGGTGGAGCAGCAGAAAAATTCTGTCCAAGTGAAGCAGGAAAATGATATCTTTTGTGCTTTTACTTCCACTTGATACAAGTCTGAAGGGTCAACATCCAAATG | |||||||||