| mature miRNA: TTCCACAGCTTTCTTGAACTG species: Capsicum annuum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|224646593|gb|GD094006.1|GD094006 KS20008A01 KS20 Capsicum annuum cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCACGAGGCTGAAAAGAAGAAAGAATGGCAGGTATTCAGCATAGTATTTCAACTTCAATCTCTTCATCAACTTCTACATTCTTGGGTCACAACAAACTCCGTTTCAGGAATCAAAATGTGTCAATGCCAGGCAAAAGCAGTGGTATTGTCAGATGTGTTGCAACACCCTCTACGGAGAAAACTTCTTACAAGACACAGGTCTCACGCAATGAGAACTTAGCTAAACTTCAAGCTGGTTATCTGTTTCCTGAGATCGGAAGAAGGAGATCTGCACACATGTTGAAACACCCCGATGCTAAAATTATAAGCCTTGGAATTGGTGACACTACTGAGCCCATTCCTGAATTTATAACTTCTGCCATGGCACAGAGAGCACATGAACTTTCAACATTAAAGGGTTACAGTGGTTATGGTGCTGAGCAAGGAGAAAAACAACTTAGAGCCTCCATTGCTTCTACCTATTATGGAAATGTTGGATTAGAAGAAGAGGAGATCTTCGTTTCTGATGGTGCCAAAAGTGATATATCTCGACTTCAGGTTCTTTTTGGGTCTAATGTGACTATTGCTGTGCAAGACCCATCATATCCGGCTTATGTGGATTCAAGTGTTATTATGGGCCAAACTGGTCAGTTTCAGAAAGATGTGGAGAAGTACGGAAATATTGCATACATGAGATGTAC | |||||||||
gi|224650217|gb|GD091822.1|GD091822 KS19049C09 KS19 Capsicum annuum cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCACGAGGATTTGCCAAACTAGATTACAATTTATTGCAACTGCTACATAAGAAAGAGCTTAGTGAACTCACGCTGTGGTGGAAAGACTTGAAACTTGTGTCTGAGCTTCCATATATTAGAGACAGAATAGTGGAATGCTTCTTATGTGCCATAGGCGTATATTTTGAACCTCAATACTCTCAAGCTAGAATTATGCTTACAAAATGCATTGTCATGCTTTCAGTACTTGATGATACGTATGACTCATATGGTACTCTTGATGAATTGCTTTTGTTCACTAAAGCTGTGGAACGGTGGGATTTAAGTGAAATTGATCGACTCCCAAGCTATATGAAAACGATATACAGTACTCTTCTCAATCTTTTTAAAGATTATGATATTGAAGTAAAGGAGTTGAATACATTTAATGGAGTTTGTTATGTCAAAGAAGCGATGAAAGAAACCGTGAGGAGTTACTATATTGAAGCAAAATGGTTCATCAAAGGAAATGTGCCATTATTTGAAGAGTACCTCAACAATGCATTGATCACAGGAGCTTTTTACTTACTTGTACCAGCATCACTATTAGGCATGAGATCAACTTCAAAGGCATCGTTTGATTGGATATTGAATAAACCAAAAATCCTTTTGGCTTCTGCAATTGTTGGTCGAGTTGTTG | |||||||||
gi|224693331|gb|GD054071.1|GD054071 KS13022G05 KS13 Capsicum annuum cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCAACTGTGGTGATGTCAGTCCCAATGTGCTCGGTGCGTTCTGCATAGACACAGGGCTTCCTTGCGACTTCAATCATAGTACATGCGGTGGCAAGAACGAGTTATGTTATGGTCGAGGACCAGGATACCCTGATGAATTTGAGAGTACGCGCATCATTGGAGATAGACAATTTAAAAAAGCTGTGGAGCTTTTCGATAAAGCAACAGAGCAAGTAAAGGGAAAGATTGATTATCGTCACACCTATGTGGACTTCTCCAAACTCGAGGTAACAGTTCCAAAAGAGGGTGGTGGTACTGAAACGGTTAAAACCTGTGCTGCTGCAATGGGTTTTGCATTTGCTGCCGGTACAACTGATGGTCCTGGAGCATTTGATTTTAAGCAGGGAGATGACCAGGGAAATGCTTTTTGGAAGTTGGTGCGAAACTTGCTTAAAACACCAGGCGCTGAACAAAAGAAGTGCCAACATCCCAAGCCCATTTTGCTCGATACTGGTGAAATGAAGGTGCCGTATGATTGGGCGCCTACAATACTTCCGGTTCAGATTCTGAGAATAGGGCAGCTGGTCATTCTCAGTGTACCTGGAGAATTCACTACCATGGCGGGTAGACGCCTGCAAGATGCTGTGAAGACGGTGCTCACGAGTGGGGTTACCAAGGAGTTCGGTAGCAATATTCATGTTGTGCTAGCTGGGTTGACTAATACATATTCGCAATATATA | |||||||||
gi|224688934|gb|GD093737.1|GD093737 KS20005A11 KS20 Capsicum annuum cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TCACTCATTAAGTTAGCTAATGCAACAGAAGAATTGGCTACTAAGGAGAAGGAAATTTTCACTCCTGTCTTGAAGAAATATCATCAGATTGCAGCTGGTGTTGCGGCAGTGACATTACATACTTGTTACGGAACTTTGTTAAGGCAATACCTAGCAGGTACGACCTTTCTCACGAGTGAGACAGCGTTAGTGTTGCAGAGGGCTGGGAAACTCGAGAAGGTTTTAGTCCAAATGGTGGTGGAGGATTCTGTCGATAGCGAGGATGGTGGCAAAATGATGGTGAGGGAGATGATTCCTTATGAAGTTGACTCAATCAAAATTAACCTCTTGCGGAAATGGATCCACGATAGTTTGAAGAAAGGGAAAGAGGTTCTCGTAAGATCAAAAGACTCCGAAACATGGAATCCGAAATCCAAAAGCGAGCCATATGCGCAATCAGCAATTGATCTAGTGAGACATTCCAAGGAAGCAGTGGAAAATTTCTTCGAAATTCCTACAATCATCACCGAGAATTTGGTCACTGATATCGCAGATGGCATAGAGAACTTATTCAAAGAATATGTTATCTTTGTTGCATCATGTGGTGCAAAACAGAATTACATGCCTACACTTCCTCCTTTAACAAGATGTGGCCAAGACACAAAATTTATGAAACTATGGAAGAAAGCTGCTCGTACTG | |||||||||
gi|224667280|gb|GD106727.1|GD106727 KS22018H03 KS22 Capsicum annuum cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCACGAGGCTAGCTCCAAAGGGTGTGTGGGATACCATTTCCAGATTCCTGTATGATATTGAGCCAGAGTTTGTAGACTCAAAGTACTTTTGTGCTGCTGCAAGGAAACGGGGTTATATTCATAATCTACCTATTAAAAATAGATTTCCTTTGCTTCCACTTCCCCCGCGCACTATTAATGAAGCACTTCCCTTAACAAAGAAATGGTGGCCATCTTGGGATCCACGGACAAAGTTAAATTGTTTGCAAACAGCTATTGGGAGTGCAAGGTTAACTGATAGGATCAGGAAAGCTGTGGAGGCCTTTGATGGTGAGCCACCTATGAGGGTGCAACAGTATGTTCTTGATCAATG | |||||||||
gi|224653042|gb|GD123257.1|GD123257 KS24058C03 KS24 Capsicum annuum cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCACGAGGCAGCCGCCGGCGTAGCTTCTCAGACCATCAAACATCTCTCCTTAGGGGAGGCATGCATTCATTCGATCCCTACAGAAAAATCCACCCATACATATGCCACACATCTCTCAGCAAGTGCACCAATCTGACGGATGCCCAACTTAAATTTTTGAAGACCAATTACGTTGGGCGCAAACGATTATCAACCAAGCTCAATCAGAAGTGCAATGCAAGTTAGGGAAAGTGAAGTAGAGCTCAATCCAATACTCATCAGCACCAAATTCAGAACAAGCTAGGATGAATTTATTACCAACAGAGAAGTTGAAAATGGCTGCAGTTCAACCACAATCCATTCTGAGTAGCTTAATGATGGTGAAAATGGATACAATAACATCAACCACTGATGGAAGCTCAGATTATTATCCATTACTTCTGGAGATGCAGGAAAGTGTGGACTCATACATTAAGTAGTTCAAATTCCTGAATTGTTGGGTGGAGAATCCCACATTATTTAACACTGTGGAGACATGCTGGAAGAAGCCTTGTGCAGAAGCACCCATGTGGAGATTTCAACAAAAGATGAAAAGACTAACTTCTACCCTAAGCCACTGGTCTAAAGAAGAATTTTGGAGACATTTATGCTAATGTGAAAGCTTATGAAGAGAGGGTCAAGGAAGTTGTGGAAAATTTAA | |||||||||
gi|224640778|gb|GD109504.1|GD109504 KS22048G05 KS22 Capsicum annuum cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TTTGTGTACAAAATGACTCTTTTTGTACTTTTCCACAGCTTTCTTGAACTGCATAAATCAAAATTTTAATTCTTTTTTTTTTTTGGTTAAGATGAAGAGAATTAATTAAAATTTTTGGGGTTCAATAAAGCTGTGGGAAGATACATATAGAGTCAACAGCATATATATTTTTATTCTTTTTATTATTCAAAAATTATAATTAGCAGATTTGATTATTATTATTATTATTATTATTACTTCATGGTGAATTGATGATCTTGTTGAAGATGTTTCTGAAGGACTTTTCATCGAAAATTGAATATATTTTATGGTGATATAAATAGGTAATTCTTTTAATATATATATATATATATATATATATATATATATATATATATATATATATATAGTTTATATTGAATTCTTTGACTTTTTTTCTATATATCTAACTTTTTATATTTTTGGATTTTATTAGTGAAATTCATGATTCTGCTTATTAGATCTATTATTGTGTGTACATATATCAATTCTTTATATATTGAATTGAATTTCATTAGTGAAAATTCTGAATGAGAAATTATTATTGGTGAGTT | |||||||||
gi|224693430|gb|GD063886.1|GD063886 KS15005H04 KS15 Capsicum annuum cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TTTTTAAAAAATTATACTTCAATTAACACTAATTAGTAAATTAATGAAGATTAACAATTAGCTAGGGCATACTCCTAGCTATTATAGTACTTATAAAGAATCTTCACAACTTTGACAACCATTAAATTCTTAAAAGTTTATCAAATGTGGCAAATGGAGGTTAAAATATATCCCTTTTTTTTTTACCATAAAAGGTAAAGGGTGAATGAAACTTTCCACATTTTTTGATGTAACACAGTAGTAGTTAGTACCATCATCCAACCACTTTCTCTCTCTTTTCCTCTCTAGGTTTTAATTGGTGGAGCTATCCAATAATATCTTCCAACAACTAATTAAAAAAAATTTCTCCTCTTTTTTTTCTTCCCAAGAACAACAAGTGAACAGTGCTTATTCGATCTCAAAATTAGGTAGTACTAGTAGTAGTTTCTTGAAGCATCTAGTACTACAGCACAATTAATATCTTCTGTAATTCAGAATGGCAAGAGAGAAGATAAAGATAAAGAAGATAGATAATATAACAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGGCTTTTCAAGAAAGCTGAGGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTCGTTATTTTCTCTTCTACTGGAAAGCTTTTTGAATTCGCTAGCTCCAGCATGAATGATATCCTTGGA | |||||||||
gi|51300211|gb|CO909908.1|CO909908 BJ02053G02 BJ02 Capsicum annuum cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TTTTGTTCTTCCTTCTTTCACTATCCATATCCATGGCTATTATTAACTAACTGATTTTGTCATCCTGAAGGGGAAATGATCAATGTGAAACACTAGGGCAAGAAAATTACTGAACAATTGTTCTGCAACGGTGGTGAATCGATGATCAAGAAAGTTGTGGAAAACAATTCTGATGAAAGGAAAATCAACTGGGGTGTTGGTGTCAGCAATCAGGAATCCTTTCGCCTTGAAAAGTCGTCACAAAAACGTGAAGTGCCAAAAAATAGAGTTTTCAAAATCAATCAGAAGGGCAGTGCTAATTCTGCATTTGAGAGACAATTGCCCATTATCAGAAAAAGATCACGAGAATTAGCCAATGAAGATCAACAACGCTTCAAGAAGG | |||||||||