| mature miRNA: CCCGGTCATTTTGTTTATAGA species: Carica papaya database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|186792471|gb|EX291537.1|EX291537 1579463_5_C05_029 PY06 Carica papaya cDNA, mRNA sequence CCCGGTCATTTTGTTTATAGA EST sequence (targeted fragment marked with yellow): CTATAGGTAAAATGACTGGGAAGACGGGATTCGGCCATTACGGCCTGCAGGATCCGAAAAAACCTCCCACACCTCCCCCTGAACCTGAAACATAAAATGAATGCAATTGTTGTTGTTAACTTGTTTATTGCAGCTTATAATGGTTACAAATAAAGCAATAGCATCACAAATTTCACAAATAAAGCATTTTTTTCACTGCATTCTAGTTGTGGTTTGTCCAAACTCATCAATGTATCTTATCATGTCTGGATCCGGCCGCCTCGGCCCTCGAGAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGTAGGTAAGTGAACATGGTCATAGCTGTTTCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAAGAATGTGAATAAAGGCCGGATAAACTTGTGCTTATTTTTCTTTACGTCCTTTAAAAAGGCCGTAATTTCCAGCTGAACG | |||||||||
gi|186831366|gb|EX276455.1|EX276455 1457544_5_O06_017 PY06 Carica papaya cDNA, mRNA sequence CCCGGTCATTTTGTTTATAGA EST sequence (targeted fragment marked with yellow): CACCCCCTCCCTCATAAGAATGCGCCGATTTCACAGATCTACTGTTTAAAAAACATGTCAGAAAATGGCGCGTTTCTCCTTTTCCTTCTCTATCATCTTCATCTTCTCTCTACTACTCGGCGTCGCGCTCACTAAAACCCTCAAACGTGACGTGAAAGCTTTGAATGAGATAAAGGCGTCGCTAGGATGGAGAGTGGTGTACGCGTGGGTCGGAGACGATCCTTGCGGTGATGGTGATCTCCCTCCCTGGTCCGGTGTTACCTGCTCCACTCAGGGCGATTACAGAGTCGTAACGGAGCTTGAAGTATACGCGGTGTCAATAGTCGGACCTTTCCCAACTGCAGTCACGAATCTGCTGGATCTCACAAGACTGGATCTGCATAATAACAAGTTGACTGGTCCAATTCCTCCTCAAATTGGAAGACTTAAGCGGCTTAAGATACTTAATTTGAGGTGGAATAAGCTGCAAGATGTCCTCCCTCCCGAAATTGGTGAACTGAAGAGCCTAACTCATCTATATCTGAGTTTTAATAATTTCAAAGGTGAAATTCCTAAGGAGCTTGCGAATCTGCCAGATCTTCGTTATCTCTATCTACAGGAGAACCGTTTTACTGGACGAGTTCCAGCTGACTTGGGGACTTTGCAAAATCTTCGGCATTTGGATGCTGGTAACAATCATTTGGTGGGTACTATAAGAGAGCTCATACGGATTGAGGGTTGCTTTCCAGCTCTTCGAAACCTTTACCTGAATAATAATTATTTGACTGGAGGAATTCCGGGCTCAACTGGCAAACTTGACTAACCTGAAATTTTGTATTTATCCTATAACAAAATGACTGGGATAATACCATCTGGACTTGCTCATATACCTAAACTGATTTACCTGTACGTGGGATCACAACCAATTTACCGGAGGAATACCCGACGTCTTCTATAAACATCCATTCTAAGGGAAATGTACATTGAAGGAAATGCATTCAGGCCTGGCGTAAATCCATAGTGTACACAAGGTACTGG | |||||||||