| mature miRNA: CTAGATTCACGCACAAACTCG species: Carica papaya database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|186858367|gb|EX265571.1|EX265571 1445916_5_J18_071 PY06 Carica papaya cDNA, mRNA sequence CTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): CGGGAAAGGACGGGGGATTCGGCCATTACGGCCGGGGCTGTTCCAGAATTTGGGCTCGGTGACGGAAAGGACGAGGCATATTTCAAGTTTGTGCGCGAATCTAATCCAAAAAAACTCATCACTGAAACAGGCTTCTTGCCGTTCCCCTTTGATTTACTAATCAAATGCACTGCTTCATGGCGGGTGTGTGCTAGATTCACGCACAAACTCGTAATCTGTCTTCGTCTGTTCTCTTCTTTCTTCCACTTTTGTTTTTCAGTTAAACCTTGGAGATAAATCGTGGATTATGAAGAAATCTGGACGGAATGTTGATGAACTGAGAACTAGCCGTGAAGCTTGCCTATGCAGCTTCGCGATTTCGATTTGGTACACTCTATTCAAATTTATTCCTTCGTTTTCTTAATTTATTAGCAGGGGACTAGGCGTTGATTGATTAAACAGGAGCTGAAAATTAGATTTTTTAAAGGTTATACTTTTTAATTATTCCATGATCATTGGGTATTGGATTGCAAAATGAATTGGATGATTAATTTATTGGAAGCATGGCGCAGAGGTAATTCTGCAGAATTTTATTTGCTTAAGTAAGCTTGTGAATTGTGGAAATCATGGCAGATATATTTGTTTAAATCTTACTCCTAGATAGTTCTGTAATGGATGGTAGGAGACAAAACGAAGGGAAGATGAGTCCGGTGTGGTAATAAAATATGAACAGGGAGAAATAGATTATAAAATAAGAATTTTGCTTTGAAGTCCACATTTAGATTGCAGTGGATTGCTCTTAGTTGAACAGAGTGATGAAAAACTATAAAGGCTGTTTCTGTTGAATAAATTTGTATGTTTTTTTATGTTTCCTGTTGTGGTAGTCTTATTAACTAATTTGTTTAAAAATGAAGCTGATAAGTATTGAATCTAATTTATAAAAATTTTACCTATTATTAGGTTGATGAGTGTTGAACCTAATTTATAAGAACCTCAGAATTCAAAAGTATCGGCAGAGGACCAAGAAATTACTCGACCCGTAGATCTGTAACAGTCACAATAGTATTGCTGAACTGCTTGACATGATACTTCCTTTGGTATTTTAAAGTGTATTTTTACGTGAACCACTGGTGTACGTTCTTACGAGAACCAACTCTTGGTTAT | |||||||||
gi|186778209|gb|EX268324.1|EX268324 1448909_5_G11_042 PY06 Carica papaya cDNA, mRNA sequence CTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): CCTTTTCATCGAGTCTTTGCCTGAAGTCGGGATTCGGCATTACTTTTCGGGAGCTACTATTGTCCGATGTCACTGTGGTCGTAGAAAAAGCGGCATCAAACTCGTTTGTTTCCAGAGAGTGAGAAAGATGGAGGTACTTCTGCTAATGTACCCCCTGGCACAGTCGTAGATACAAAGATTGTGCACCCTTTTGAGTTTGATTTCTATCTGTGTAGTCACTATGGGAGCATTGGAACAAGCAAGCCGACACATTACCATGTGTTGTGGGATGAGAATGGATTTTCTTCTGATGAACTGCAGAAACTCATTTACAACATGTGCTTCACATTTGCCCGGTGCACGAAATCAGTATCTTTGGTACCCCCTGTGTACTATGCGGATCTTGTTGCTTACAGAGGGAGGCTGTATCACGAAGCAGTCATGGAGGGGGGGTCACAAGCGCCTGCATTGACTTCAACATCATTATCAGAGGCATTTTTGGAGAAGTTCTACAAGGTGCATTCTGATCTGCAAAACATAATGTTCTTTGTTTGAAGGGTTAGAGCCAATGAAGAGGGTTATGTCTTGACATTTCATGTTCGTTTTGCGTGAAAACTAGTTATGGTGAGTGGGTTTGTGCGTGAATCTAATTCGGCTAGGACAATGATGGAGCACCTGCACTTTTTCTCTTTCCTTTTAACACGAAGATGTTTATTTTAATTGATGGGAATATAAAACTGTCATAAATAATTAGTTTTAAATAGAACTGCTGTAATGCAATTTGTATTGTTTCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGACAAAAAAAAAATTTAATAAAAAATAATATAGAAATATAGAATTACCAATAGTAGATAACTCGAAAAAGGCTATTAACTAAAAATTTTATGTTATTGACCTCCAGCGTGGGATTCAAACCAGAGAGAATGTTGTTTGATAAATCTCTGTTCAAAAAAAAAGGGGGGGGGGCCGCCCCCGCCCATCAAAAAAATTATCTATATACACCTTTTTTTTTGTCCCCCCTCAAAAAAAGAAAAAAGAAGAGTTATTTTTTGTTTTTTTCTAAAAAAAGGGGGTCAGGACGGATCGAGATCTATGTACT | |||||||||