mature miRNA: TCATCATCATCATCATCCTCT species: Carthamus tinctorius database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|125381755|gb|EL395190.1|EL395190 CFFM6552.b1_O05.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM6552, mRNA sequen TCATCATCATCATCATCCTCT EST sequence (targeted fragment marked with yellow): GCTCTGATTGATTCTTTCATGGCGAAAAAAGATCAATAAATCGATTCCTTTTTGTAGACCAATTTCAAAATCCAATCCAATTTAACCCCAATTAGGGTTAGTTTCTTTCTACAGAGTTTCTTTAATTGCGACGTGAAATCAGTGGAATCTTTATTTGCGGTGGATTGTGTTCCTGAGGGGGACTAGCATCTATTTTGGATAGTGCCAATTATGCAATCGTTTCCTCCCTAAATTTTTGGCATACTAGGATGGCTGTAACCCCTGAAGAGCAGAATATAGACCATGCAATGGATAGTTTCCCTTTGCTTGTCGAGAGTCGAGGAAACCATGAAAGTCAGCATGTCATTGATTTGGAGAGAGGAGGTGATGATGATGATGACACTTCCTCATCAGATGCATCTAGTAATTCTCCTCCTCACGGGCACTCTCATAGCCCTAGGGTTTCCACTTCTCAGCTGATTCGTGCTTCATCCAGTGGATCGAACGCGCTTGGGAGAAGAGGGGAAGGATATGGTCGCCGTCGCTGGAGCCCGTTCGACACTTTGTTATGGATTTCAATTGAGCTAGTATTCACCTTGGGGCAAATCATTGCATCCATTGTTGTTTTATATATATCACGAAATGAAAACCCGCAGACTCCTTTGTTTGCTTGGATTGTGGGTTACGCGGCTGGGTGTGTTGCAAGCCTTTCCGTTTTATACTGGCGTTATCTTCATCGTAATCAGGCTACTGAACCGGGGTCGACTCAGGTTCGACAGACACCGTCTGAAGCTAACCCATCCACAGAACCGAATC | |||||||||
gi|125399975|gb|EL411960.1|EL411960 CFFS9574.b1_L18.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS9574, mRNA sequen TCATCATCATCATCATCCTCT EST sequence (targeted fragment marked with yellow): ACTCCATCATGGGGTATGAAGAACCACCAAACCCATCCGAGAAATGCAATTTCCTCGAGGATGCTCTTGCAACCTGCGATACCTTTTGCAGAAAGATTTCTTTTCCAACACAAGAAGATGATGATGAGGATGATGTCCGCGATTATGACGATGAACAGGAAGTTTTTGTTTCGGCAGTGCTAAGTAGGTATATGGAAGCAAAGTCAAAGAGGAAGGTTGGACCTACCGCTGATAGTTTCATATGGGGTTTCTCCCCAACTGAGTTACTTCCCACCAAAAAGGAAATAGAGAGTGATGTTGAAGACATGGATGAATTCTACTCTTCTTGTAGTCATCTTTCTCGATGTTCAAGCGCTACAACTGCAGAAGCATTTATGTCTGTAAAGACGAATCTTTCTCGATGTTCGAGTACGGGTAGTTTTGAGTTCCCAATCTTGAGAAGGAAGCGGTCTATTATTCGAGAGCTTTGTCATTGTGAAGGCTGGCCTTTTGGTCTTTGTAGGAAGGCCCTTCTCGTTCCACCTCTGCCCAAATCACCGTCTGAATCTTGGTTGTGGCGTAAAACTACCAGGACTATC | |||||||||
gi|125387629|gb|EL400969.1|EL400969 CFFS12245.b1_J14.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS12245, mRNA sequ TCATCATCATCATCATCCTCT EST sequence (targeted fragment marked with yellow): TCAATAGATCAAAGATGACTATATAAGCCAAAAAGCAGCTGTCTTCCCAAATCACCATTGATTCACACAAAGATGCAGCAACCCACAACTCAACTTGGTCTCCATGAGGATCTTCTCTTCCCTCCCTATTCATCACTATTCACAAACTCATTTATTCATTGTGAAGATGACCTTCTCCTACTCCCCACACCTTCATATTCATCAATATTCACAAACCCATCTTCATTCTCACAACCATCTTTCCAATCCCTTTGTAACCAATCAATCTACTCTTCCGATCCCTCGTTCAATGCTTCCGTTTCTTCGTCGTTATACGATCAGCAGATCGTTCCGAATCAACAAGAATCCGAAGCCCGAACGATGGCGGAAGAAGATGAAGATGATGATGATGAAGATCATGGGTATGGTCATGGTCATATTTACAAGATTCATGAGAATGTTGTTTCTCATGATCAAACCGGACAAATCCCGGATGTTTTTAACATGGGATGGAATGGCGAAAAGAAGCGTAAATCGAAGAGGGTTGAAGGCCAGCCTTCCAAGAATTTAATGGCGGAGAGACGGCGGAGGAAACGGTTAAACGATCGGCTCTCCATGCTCCGATCGATTGTTCCCAAGATCAGCAAGATGGATAGAACATCGATTCTTGGGGATACGATCGATTATATGAAGGAACTTCAAGAAAAGATTCGTAATCTGAAAGAACAAGATATCGATCAATCGAAATTGGTGGGCAGTTTTAAGGAGCTCAAAATGAATGAAGGTC | |||||||||
gi|125371677|gb|EL386189.1|EL386189 CFFM23610.b1_D23.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM23610, mRNA sequ TCATCATCATCATCATCCTCT EST sequence (targeted fragment marked with yellow): TAACCTTTTTTTAATAGAATGTCTCTTTGAGACATGGTTTCCGTACACCCCTATATATAACTTTTGTATGTACTCAACACCCCATCGTTAAACTTGCTTTTATCGGCTAGGGTTAGCTCATCTAATAATAAGGCTTGGCCTTTTTGGATTTTCTTTAAAGATCATTCGTTCGAGTCCTGCAAGCAGGCTACCAGGTTTTTTTTAGCTATTCTGCAAAATCCTTAGGATTAGTCGAGTTGTGCACAAGCTAACCTGTACACCCACAGTAAAAGAAAATGTCTGACAAGCCACAACGTGACTCCCCAACAACTAGCCAAGCAACTGTGGCTACAACAACTCCTACTATGTCGTCCATCAAGCTTGAATGTCCGGTGCAGACCGGTGAAGTTTTCGCCCAACCTCCTTCGCGGTCACCTCTTGTGTGCCCAAACAATTATGCATTAAGTAATAATAACGGGTATTTTCGTCGTGAGAAAAAACCATCATTTTGCAGTGTAGGAGTTCGATCTCATCCTAGAAAGAATTTCAAGCTTGATGAGCTGAGGACAAACAACATAGAAGTTATGTACAATGACATACCACAAAGAAATTCCAGGACGTTCGTTGTGGACGACGATGACGATGATGATGATGATGACGATAGTGACGACGAANATATCGATGAAAAACAAGGTAGTGCCACCACATGGGGCCTCCAATCATCGATGGCCTCTGATTACTATTTATTTTCTAAAATTTGAA | |||||||||
gi|125397272|gb|EL409257.1|EL409257 CFFS6913.b1_A01.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS6913, mRNA sequen TCATCATCATCATCATCCTCT |