mature miRNA: TCATCATCATCATCATCTTCA species: Carthamus tinctorius database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|125395174|gb|EL408512.1|EL408512 CFFS6233.b1_A23.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS6233, mRNA sequen TCATCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): ACAAAGAATTTCGAATAGTTTTGAAGGTTTGAGAAGAAATGGGCTCTTTAATGGCGGGTTGGGACTCACCAACTAAATCCAAAATGACAGGTTTGCTGCTGCAAAATATGATGCATCAGAGGCGAGGTGGTGCTGGAAGTAATAGAATGATGATGATGATGATGAATCATGGGAAATTGGATAGGAACAAGTCGACGACGAAGGATGAAATCGCAACTTACTGGAAAATGAAGAAAAACAAAGAGGAAGTACACGATGTTCTTGAATCTTGTCACACGTTTTCGAATGGAAACGAGAAAATGAGACTGAAAAGACATATACAAGATCAAATTCCCTTCCAATAACGAAGGGAAATCCCATCACTGAAATTGCAGAGGAAGACGAAGAAGAAAAAGGGGAGAAACCTTTTGAGAAGAATGGCTGGTGGATTAATAGCAGATGGGCGTTTTTGAATGAACCACCCGTGATAGCATCTGAAACGCCATTCAGATACGCTTCACAATTTCATGTTGCCAAAAAACACATCGACAACCCCAACCACCACGTTGTTGCTAGCAGCATTATAACTTGAGCTGAATCCCCTACGCATTTAAACGTTTTATAAAGGAGTTCGTGATATGTGTCAATGTGTGATACTTAAGAGTTTGGTGTTGTTTTAGTTACCTAGTTGATCTAAACTATAAGGACTCCGATAATATTTAAACATATGTAACTTTCTTTAGTGTTATTATATGTGAATATAATATGTACATATTTAAACCG | |||||||||
gi|125369590|gb|EL384102.1|EL384102 CFFM21332.b1_G06.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM21332, mRNA sequ TCATCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): ACGGATTAGGGCTCACTTCCCCCTTTCATTCGGCAAGAAAACCAAATCCAAAATCTCCACCGAATCAATCCACAACGCCACCCGCCGTCCTCCCACCACCACCGATGACTCACCTTCATCCACTTCCCTTCCCACCACCACCACCACCACCACCACCACCGCTTTCCCTTCGCTATCCACCTCCTCTAAATCATGGCTAAATTCCCTCCAGAAAAACCCTAAAAACCTCGCTACTGCGAGCGACGATCATGTGGAGATTGGCCCGCCGCGGCCGCCTCCTCCTCCGCCGTCGTCTGGTTCTGTTGATGGAGAAGATGATGATGATGTCATGGTTGGACCTCCTAGGCCTATGCCAGGTGGTGGTAATGGTGATGAGGATGATGATGATGAGCCGATTATTGGGCCACCGAGGCCGCCGGTGGGTTCGGATAGCGAAGATGAGCTGTCCGAAGAAGATGAGCGAGAGAATCGACACCGGATACCTCTTAGCAATGAGATTGTTTTGAAGGGCCATACCAAGGTTGTTTCTGCTCTTGCTATTGACCATTCGGGATCTAGAGTACTTTCCGGAAGCTATGACTACTCAATTCGTATGTACGACTTCCAAGGGATGAATGCTCGTTTGGAATCATTTCGACAACTTGAACCTTCTGAAGGACACCAAGTCCGTAGTTTAAGTTGGAGTCCTAGCTCTGATCGATTCTTATGTGTTACCGGATCTGCACAAGCTAAGATATATGATCGTGATGGATTGACACTTGGCGAGTTTGTGAAAGGTGATATGTATATCCGTGACTTGAAGAATACA | |||||||||
gi|125366025|gb|EL380537.1|EL380537 CFFM1795.b1_E18.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM1795, mRNA sequen TCATCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): TTGCATAGGAAAGAATCCCAAAATTTCCCAAATTTCTACTGGAATTTNCACTAGGGTTTTTCCTCCATTACCAGATGTAGTTTAATTCATCATCTTATCAAACAAAAATCTCCCCTTTTCGTTGCCCTAATTCACGAAATGAGCTTCCGATGAGCAGGAATCGATCGATGGATCCGAACGCAGTGGTGCTTGAAATAAGCTCCGATGAAGAGGTCGGTTGGGAAGGTCACGACGACGAGAGGTTGATTATCGATGGCGGTGGTGGTGATGATCATAATTGGATAGCAGAGCTGCTCGATGAGGTTAATCGAGACGATTGCGGCGGTTACTACGACGGAGGTGGTGGTGATGATGATGATTCCGATGAAGTGGTGGTGGTGAGTGAGGTGTTTCCGGCGAAGAAATCGAGGAGGAAGTTATTGAGGTCGAAGTCTCCTTCTTTGATTGACCTCGATGACGACTGTGTGGTTCTAGAGCATGATCCTGATAAGCCTATGGGGATCTCGAGTGAAAATCCGATCGCCGGCGATGAGGAGGATGGTGATTCCGATGATCTAGTTGTTGTTAGCGAAAAAGGACAGGTTGCGTGTCGAGATTATCCCCATCCAAGACACCTTTGTATCAAGTTCCCTTTCTCGACTACCGCAAACCAATCTCACTGTGATCAGTGCTACTGTTATGTTTGTGACTCACTTGCTCCATGTGTCTATTGGGGCAATGGCAGTGCCGTTCTCGACCATTGTCTTGCCACCGATAAAGACGACTTCTGGAAGCTCGAG | |||||||||
gi|125481693|gb|EL510476.1|EL510476 CFFY458.b1_C19.ab1 CFF(XYZ) safflower Carthamus tinctorius cDNA clone CFFY458, mRNA sequence TCATCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): ACACCATCACCACCACCACCACAAACCATCTAACAATGGCAAAGCTCATAGTCCTCGCCCTCACCATCGCCACCCTCCTAGCCTTCGCCTCTGCCCACCGAACCATCGTCACCACCACCATCGAAGAAGACGACACCACCAACCCTAGGTCGCAATGTAGATACAACAACAACAGTGCGGGCGACATCTCCAGGGGCAGCAACTCCGGCAATGCCAGACTCACCTCCAACAGCCGGATCAAACCCAACAACAAACCCTCCAACAGTGCTGCCAAGAGCTCCGAAACGTCGACCAGCAGTGCCAGTGTAGGGCCGTCAAAAAGATATTCGGAGAGGTTGCTGAGCAACAACAGCAGCAACAAGAAACTGGACGTTTTGGTTCACAGCAGATCGAAAGGATGAAACAAAGAGCCGAAAACCTCCCTAACCAATGCAACCTCCAAAGCGGAAGACAGTGTCGGATTAGGAGCGGGGGAGAGTGCCGGCAGGAGGTCCAAGGACGGCAGTTTAACCGGTGCCAGAGCTACTTGGAGCAACAAACGGGGTCGGGTTACCTTCAGAGCGTTGTTTCTTCGAACGAGAGACGACGAGGGCGAGGGGGAGAAGATCAAGTGGAGCAGTGCTGCTCGGAGCTTAGGAACGTGGAGGTTGAGTGCCAGTGTGAGGCCATGAAGCAGGTGATGAGGCAAGCTCAAGGAAGGCAGGGGCAGCAGCCGGAGATTCGACGGGTGGTTGAGGATCTGAGGGACCAATGTAACTTAGAAATGCAACAATGCCAGCTTCATTCTCGGATGTTTTGAAGGGACTGAAGAAGATGAAGATGAAGATGATGATGGTGAGAAATAAATTAAGGTAGATATATGTTTGTCTCATCTTGAGTTTTAGATGAGACTAGTTTTCCCAAATACCAATCATCATCAATCTATGCATAAATAAAAATAAGTTTTTAATTCAAAAAAAAAAAAAAAA | |||||||||
gi|125395816|gb|EL408722.1|EL408722 CFFS6427.b1_E24.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS6427, mRNA sequen TCATCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): TCAGCTGGCAAGAAAAGAGATGGAAAAAAGTTGAACATTTCGGATATGGATGCTGATAAAGAAAAAGATGCTGAATTAAAATGTAATGTTGATGTAAATAGTGCTGCTGAGCTGTCATCTATTTCGATTAATCCAAAGTTGCAAGATGATGATGATGATAGCGATGATTCTGATACAAAGCCATATAATAAGCTACCCAACTTGGATGCTTCAAAGATTTTACTTTTACTTCAATCGGAATACAATGAGCTCATTGATACAAGCGATCATTGCAAGGATTTGCAAACGTATCTCGAATACTGTAAGGATGTGGTTTTTGCTGGTGTGGAACTGTCATTCGAGGATCATGAGGAACAACAGATAATAGAGGACCTTTGGAATTTCTGTCAAAAGGAAGAGGACCATAAACCATCAAGTCCTTGGGAGTCCAGCTTCTCGACGCCTACTTGTGGTCCCCACAAGAGACCTCGAGATAGTTCCAAAAGCAAGACCAAGAAAACGGAAGACGTTGATGCCCAAGTTAGCGTCACCGACTCTAAGGGGTCCCGCAAAGAAAGAGCGATAAAACGAATGATATCCAACATGGAAGAGAACAAGTTCTATTATATCCCTCCACGGACCAAAGTCAAACGATCCGACTACCTACACTACACGAGAAAAAAAGGTGAGGGGGCCTATACATACGCTGCACATGCGGATTATTACATTTTATTACGTTCTTGCGCAAGAGTCGCTCAACTTGATGTCAGGAGTATGCATTTTGCGGTGTTGAGTTTCGAAAGACGATTGGCATGGCTAGAGAAGAATATTGAGCA | |||||||||
gi|125358404|gb|EL372916.1|EL372916 CFFM10135.b1_N13.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM10135, mRNA sequ TCATCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): CGATACTTATGAGTCGTTAGTAATATTTTGAGGCTCATAAATGGATTATCAGCATTGTTGTTGGCTATATTGCCCGGCAAAACTAACCTTCTCGAAGGGATTCATGGTTGGGAGCTCAGACCATCTTTTCGTGGACCTCGGCTTCCCCGTTGGATGGAGAATGGGGTGTCTTCCTTCAACCAGTTTGTTCATGAACTATCCATGGAGTCTGATTCAGTATCAAGTGTAGATTATTCATCTGGAGAAGAGGTAGACGGTGATTATGATGATGACGATGATGATGATTACATATCTCCTGCATCTCCATCATCACAAAGTTCTCGATTCTCCAGGGCAAGCAGCTTCACCAAGCGAGAAAAGAACTCGCTGCATTGGATTTTATCCATAATTGTATGGCTTCTGCTTCCTGCAAGGCTAATGCTTGGAATACCGATATATCTGTATAATATGTGTTTTAGTAGAGGCTTAAAGGGATCCGATAGCACCGCAGGAAGATTACAGGCATCACATGTGAATGTTAGCAGGAAAGCATTGGATCATGTTGTTGAACGGGCTACCGATAGAAGACGTGGAGTGATAGAGGATCTACAGCTTGGAATGGAAATTTTTATAGAAACCATATTTGATGGTATTCACAAGGTAGCGTCTTGTTTCATCTCTCCAATGGACTCTCTCGGGGCATTTTTGAGGTGGTCTTCTCCAGGTTTTTCGGGGGATGCCCACCCTGATCATTCANGTGCATATGTTACCACCGCCACTCTTGCGGAGGGACATCCTGCTCCCACAGAAAGAAAACTAGTTTGCCTAATCCCTAAATACGGATGCA | |||||||||
gi|125389983|gb|EL403323.1|EL403323 CFFS14402.b1_C02.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS14402, mRNA sequ TCATCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): GGTGTTTATTGAGTTCATAAAGAGTGCACAAATTCAAGATTTTTGGTGGGTTTTTGGATTGCATATAATTTGTGTTAAAATGTCCGGAGTTCAAGATTCGTTAGAGATAAAATTCCGTTTGATTGATGGATCGGATATTGGTCCGAAAAGCTTTCCGGCAGCTGCAAGTGTTGCAACATTGAAAGAAAGCATCCTTTCTCAATGGCCTAAAGAAAAGGAGAACGCTCCAAAGACGGTAAAAGATGTAAAGATAATTAGTGCCGGAAAGATATTGGAGAACAATAGAACGGTTGGCGAGTGCTGGAGTCCGTTGTGTGACGTTCCCGGTGGCGTTACGACTATGCACGTTGTCGTTAGCCAACCACCTCAAGAAAAAAGAAAAGAAAGTGACGAATGATCCGAAGCAAAACAAGTGCGTGTGTGTGATATTATAAGAAGCAACTCCGAGCGCAACCTTCGTGTCTTCGAATTGTAGATAAAAGGATGATGATGATGATGTTGTCAATTGAATGGTTTGGATTGAAGTTCACAAAAGAAAACAGAAAAAGAAAGAAGAAAACTTGGTGAGATATATAATACATTTGTATCTATAAAGTTTGTTTTTTTGCGGTTCGGTGTTTTGTTAAAATTCTGTGATTTATTACGTGAAAAACGCTCTCTTAATCACGCTTGATGCTTTTTCAATTGAAAGCCCGTGGTTAGATTTGAATGAAACAAATCATACTTGTTGTTAATAAAAA | |||||||||
gi|125359279|gb|EL373791.1|EL373791 CFFM11024.b1_O20.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM11024, mRNA sequ TCATCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): GCCGATTTGCTCGGGATTGCCGCCCCCTCTCTCGCTCCCGGAGCTTCATCATCCCTTGCAATACGGTTGCGAGACGGAAGTGCTTGACGAAGAACAGAATGAGGGCTTCAGCGGAGGAGCTGTCAGGTCCGGTGAAACGAGCGAAGCCACAGCGGTATCATCCATCTGAGGACATTTCGGATTCTGAAGAATCGGATGAGAATGGGGACGCCATACTTGGACCTGCTGAAACTAGCAGGACTGTTATTGAGGTAAACAGCAAAGCGATGCTTATGTTCTCAGGTCTGGTAGGTGACGGGGTCCATGAGAATATCTTCTGGCCAGACTTGCCTTACGTCACCGATGAACATGGAAGTATATATTTCCAAGTGAAAAATGATGAAGACATTCTTCAAACTCTTACTTCCGAGGATACCGTTGTGCAAGTCATAATAGGCTTAGATACAACTGACATGGTGTGTGAGATGGAGTTGATAGGTCAAGCAGAGTCTGATTTTGATATGGAGGAAATCGAGGACGAAGATTGTGGGAGTGATGATGACGATGACAACGATGATGATGAAGATGATGAGAGTGGCGGCTATGAAAATGAATGGGGTTCACTTCCAGAAGATGACGAAGATGATGAGGATTCTGATGGATCGCTTGGCGACGGGGCAA | |||||||||
gi|125391796|gb|EL405136.1|EL405136 CFFS3075.b1_E01.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFS3075, mRNA sequen TCATCATCATCATCATCTTCA EST sequence (targeted fragment marked with yellow): CGGAACAATGCAGAGTGACCAAAGACGCTTACGCCAAAATACCCAAATCCCACTTGCCGATCAAGTGGGTAGTGGATACCTTACGAATCCTCCGATTTCGTCGATTTTCGGTCAAAATGTCGATTTCCAGCCCTCGAAGATTTGCCCGAGAAATTTCATCATCTTTGATCGAACCGATAACCGTAGCCAGATTATGTACAACCCAGCTGTGGGCCAGGGCTTCGGTTACCCGGGTCTGAATTATATGAAAGATAGGATGGTTGTGCGAAATGACGTGAATGCCCCCAGAGAGACTGAGTCTGTTATGAAAGAAGATTCAGCGGATATTGATTTATTGTTGAGTTTTGAAGATGAATATGAAGAGGATGAGGACGACGAAGAAGAGGTTAGCACTGGACGGACTCATGGAAACGATGCAAGTGACACTGCGGATTCTTGTTCATCGAGAAAGAGGGGGCTAGGGGTAGTATCGTCATCTTGTTCTGGGAGGTCGAGTGAGAGAAAGCGAGAGAAGATGAGGAAGATGGTGGATTCGCTGAGAGGGATTGTGCCGGGCGGAGACCGAATGAATACAGTTGGTGTTCTTGATGAAGCTGTGAAGTATCTCAAGTCTCTCAAAGTGGAACTGCAAAAAGTGGAGAATTGATGCAAATAAGTGAGTTGATGTTATTTTCTCCTCATCTTTTTATGGTTATGATGATGATGATGTTGGTGTTGTGTTGTTGTTGCTTATTTTAAAATGGTTTCTTGGTGTTGTTAATTTGGGTAAAATAATGGATGCTTAATTG | |||||||||
gi|125374406|gb|EL388918.1|EL388918 CFFM26187.b1_E19.ab1 CFF(LMS) safflower Carthamus tinctorius cDNA clone CFFM26187, mRNA sequ TCATCATCATCATCATCTTCA |