| mature miRNA: GCGAGCTTCTCGAAGATATCA species: Cenchrus ciliaris database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164230532|gb|EB658588.1|EB658588 7Y_JF_E04 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): CCCGACATTGGCATTTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTTGAGAAGCTGGCGGCGGAGGCGGCCCAGCTCGCGCGGTACAACAAGAAGCCCACCATCACCTCCCGGGACATCCTCCCCTCCGTCCGGATAATCCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCAGCTTTTAGATGATGATTTATTCCCTTGGAAGCGTGCTTGTTTCACCTCTGTGGTAGGATGGTCGTTGCAGCGGCGGTAGTTGCCCCTGCTTTCCCGTATCCCTTGTACCTGGTCTCCTGGGTGATGTAAGAAGTTTGTTCCCGGGGTTGCGTGAAAAACAGGAAAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTA | |||||||||
gi|163982151|gb|EB657900.1|EB657900 2Y_JF_E09 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): GCGGAGGAGGAGCCCGCGGCGGAGAAGACCCCGGCGGGGAAGAAGCCCAAGGCCGAGAAGCGGCTCCCCGCGGGCAAGTCCGCCGGCAAGGAGGGCGGCGAGGGCAAGAAGGGGAAGAAGAAGGCCAAGAAGTCGGTGGAGACCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTCCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTAATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCTGTCTCTGAGGGCACCAAGGCCGTCACCAAGTTCACCTCATCTTAGGTTGGTAGATGTGGCTCAGATTATCCGGTAGGGCTAGTGGTAGTAGTTGTTGGTGATACTTGAAATGGATCGAGTATGATCTGTGTGTAGTTGTGCTTCCTTGAGAAACTAAGAATTGTGATATGCTATTGGAACATCGTTTGTGTATGGATCTGGAATGGTCACAGTGACTGGTTCTAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|164190210|gb|EB668167.1|EB668167 26X_JR_E08 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): CCGCAGCCGATGGCGCCCAAGGCCGAGAAGAAGCCCGCCGCCAAGAAGCCCGCGGAGGAGGAGCCGGCGGCCGAGAAGGCCCCGGCGGGGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAAGTCCGCCGGCAAGGACGGCGAGAAGAAGGGCAAGAAGAAGGCGAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCCGACATCGGTATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTGGCGGCGGAGGCGGCCAAACTCGCGCGGTACAACAAGAAGCCTACCATCACCTCCCGCGAGATCCAGACCTCTGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGGCCAGCTATGCCCGACTGTGTAGTAGATTCCTGTCTCTTGTTTCATGTGCAACCTGCTCATCGCAGTTACGGAACTTGGTTCCGACGGATGCTGTGGTTAGGTGTTCTAGATGTGTTCTCCTGTAGGAAAGTACCTGTTTTGATTTGAACAGAGATGTTATCTGATGTAATGGCAATGGTGCTTATTTAAATCAGCTATGTGTTTGTGGAATATATTGTTAATCCCTTGATGTTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|164172486|gb|EB668967.1|EB668967 7Y_JR_E04 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): CCCCAATCCTCCACCGCCTCCCATCTCGTCTTCCCCGAGCTCGTCGAGCGGCAACCCCAACCCCCACCCGATTCCGATGGCGCCCAAGGCTGAGAAGAAGCCCGCCGCCAAGAAGCCTGCGGAGGAGGAGCCGGCGACAGAGAAGGCGGAGAAGGCCCCGGCTGGGAAGAAACCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAAGTCCGCCGGGAAGGACGGCGAGAAGAAGGGCAAGAAGAAGGCGAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTGGCGGCGGAGGCGGCCAAGCTCGCGCGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCAGCTCTTAGATGATGATTGATTCCGTTGTTCCCGTGCTTGTTTCACCTCTGTGGTAGGATGGTCGTTGCAGCGGCGGTAGTTGCCCCTGCTTTCCTGTATCCCTTGTACCTGGTCGCCTGGTTGATGTAAGAAGTTTGTGCCTGTGGTTGCGTGAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|164190197|gb|EB666996.1|EB666996 28Z_JR_D08 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): TGAGACTGGAGCTCCTGAAGTGGGATCCCCTCCATAAAACAATTGATTTCTTAAACATGGATTGGCTCAAGGTTCTTTTTGACTATGATACTAAAGATAATGAAAGTTCCTCAGGAGGTTCTAGTGATACGGATGTGGTTCCGGTCTTAGTAGAAAAGGTGGCTCTTCCTATTTTGCACCACCGCATTAAGCACTGCTGGGACGTATTGAGTAGCAAAAGGACTGAAAATGCTGTAAATGCTATTATGATGGTGATCAGTTATTTACCAGCAACAAGCAAGGACTTGCATCAACTAGTGGCTTCTGTGAAAAATCGTCTAACCCAGGCCATCGCTGATCTTTCAGTTCCAGCCTGGGGATCAATGGTGACAAGAACTGTTCCAGGTGCCGCTCAATATGCTGCATATAGATTTGGAGTTGCAACACGTCTGCTAAGAAATGTGTGTCTGTGGAAAGGTATCCTTGCAGATGATGTTATTGAGGAGCTTGCTTTAGACGGACTACTAACTGGGAAGATCCTTCCTCATATGAAGAGTATCATTCTGGATTTTCATGATGCAATCACTAGGGCCGAGAGAATAGCTGCCTCACTTTCAGGAGTTTGGAGCAAACAAAGCCAAAAGCTGCAGCCTTTTGTAAACCTGGTGGTTGAGTTAGGAAACAAGTTGGAGAGGAGACACACTTCAGGCATTAGCGAGGAAGAGACACGTGGTTTAGCCCGTCGACTA | |||||||||
gi|164062177|gb|EB656545.1|EB656545 28Z_JF_D08 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): TTAACCCAGGCCATTGGTGATTTTTCAGTTCCAGCTTGGGGATCAATGGTGACAAGAAATGTTCCAGGTGCCGCTCAATATGGTGCATATAGATTTGGAGTTGCAACACGTTTGTTAAAAAATGTGTGTTTGTGGAAAGGTATCCTTGCAGATGATGTTATTGAGGAGCTTGCTTTAGAGGGATTATTAACTGGGAAAATCCTTCCTCATATGAAGAGTATCATTTTGGATTTTCATGATGCAATCATTAGGGCCGAGAGAATAGGTGCCTCACTTTCAGGAGTTTGGAGCAAACAAAGCCAAAAGCTGCAGCCTTTTGTAAACCTGGGGGTTGAGTTAGGAAACAAGTTGGAGAGGGGACACACTTCAGGCATTAGGGAGGAAGAGACACGTGGTTTAGCCCGTGGATTAAAAAACATATTAGTAGGACTGAATGAGTATGATAAAGCTAGATTTATTTGGAAGAAATTTCAGTTCAGAGAAGCCATTTAGCTCACATCCTGGATGTAGTGTGAGGATTCCAGTTTTGACAGAGAGGCAGGTCCTATATCCTTCCATTTTACTGAAAGAATGTTGTAATTTTGATTATTTGTACATTTTGGTCATGAGCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|164128114|gb|EB670739.1|EB670739 25Z_JR_G11 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): CCGCGATCGAATCGAAACATCCCATTCCCCAAGTCCCCCACCTCGCCGCGACCCCAAGCAGCCGTGACCGATGGCGCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCCGCTGCCGAGAAGGCGGAGAAGGCCCCGGCGGGGAAGAAGCCCAAGGCCGAGAAGCGCCTCCCCGCGGGCAAGTCCAGCGCCGGCAAGGACGGCNAGGGCAAGAAGGGCAAGAAGAAGGCCAAGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGGATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGCCGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCTCCGTCCGCCTTGTCCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCATCTTAGATAGTAGGTTCCGTGTCTGGTTGTGCTAGTACTAGTTTGGTTGGTTGGTGTGTAGTCCTGGCTCGCCCAGTTTAATTTATCTGGTAGCAGTATTGTCATCAGCACTGTCGAGTGGAATTATGGGAATGGATGGTTAGTGTGTAGATGGTTAAATTATGCTAATGCTTTTGATATGCTGCACCCTAATAGATCTGAAACGGCC | |||||||||
gi|164223111|gb|EB657517.1|EB657517 8Z6III_JF_D09 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): CAACCACCGAACCAAATCCGAGCCGGAGCCAGCCACAGCAACCCCGAGCGAGTCGATGGCCCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCCGCGACGGAGAAGGCGGAGAAGGCTCCGGCGGGGAAGAAGCCCAAGGCCGAGAAGCGGCTCCCCGCGGGGAAGACCGCCGGCAAGGAGGGCGGCGAGTCCAAGAGGGGGAGGAAGAAGGGGAAGAAGTCGGTGGAGACCTACAAGATTTACATCTTCAAGGTGCTCAAGCAGGTCCACCCCGACATCGGCATTTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATTTTCGAGAAGCTCGCCGGCGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGCGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCGCGTAGATGATCCCTAGATGATCCCGTCTGCTCGTGTGGCCTGTTGCTCCTGGTAGTCGTGCTAGTTCCAGGAATTTGGGTGGAGTGGATTGTGTAGTTAGATGTTGGGCTTTCTGATCGTGTTCTTGCTGTATGATGGGAACTAAGTTATCTGATGGAATAGTAATGGTGCTTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|164119213|gb|EB665241.1|EB665241 83X_JR_B04 pAPO Cenchrus ciliaris cDNA 5', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): CACCGAACCAAATCCGAGCCCGAGCCAGCCACAGCAACCCCCCGCGAGGCGATGGCCCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCCCCCCCTGAGAAAGGGACGGAGAAGGCGGAGAAGGCTCCGGCGGGGAAGAAGCCCAAGGCCGAGAAGCGGCTCCCCGCGGGGAAGACCGCCGGCAACCCCGCCGGCGAGGAGGAGGAGGGGGAGGAAGAAGGGGAAGAAGTCGGTGGAGACCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTCCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCCGCCAAGTTTTTCCGCTCCCACCCCAAGCCCACCATCACCTCCCGAGAAAAAGGGAGGGCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCGCGTAGATGATCCCTAGATGATCCCGTCTGCTCGTGTGGCCTGTTGCTCCTGGTAGTCGTGCTAGTTCCAGGAATTTGGGTGGAGTGGATTGTGTAGTTAGATGTTGGGCTTTCTGATCGTGTTCTTGCTGTATGATGGGAACTAAGTTATCTGATGGAATAG | |||||||||
gi|27532240|gb|BM084331.1|BM084331 pPAP_05_H02 Apomictic pistil cDNA library Cenchrus ciliaris cDNA 5', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTGGAGCAGAAACAACTCAATTATTATTGGGCAATTGGCAAACACCTGATTGACATTCCCATATGATTCCAAGAGAAACAACGCCTATAAGAAAAACCTGAAAAAACTGAGGAAGGTGACCGAACCAGAGATGCAGGGGGTGATGGGGTAAACAAAATCCACAAGGCATCATCATCATCACGAGCGTGGCAGTACGGCTCCATGGCACCCACACCACAGCAGCGAAAGACATTACACATTAGTAATGAAGGGCCATGCCTCGCCGCACAGAGGAGGCATCTACTCCTTGTACTTCATGCTCTCGAGCGTGAACCCAGGCATGTCGAAGGAGTCGGCAAACTTCTCCACCTCAGCCTTGAGGTTCTCGATGTCTTTGTTGTTCACTAGGCCCTTGTTGAAGTCCTTGAGAAGCTTGCCGTACTCCTTCTGGATGTTCAGGCAGATGGTCACCGCCTGGTGGAGGAACTCGCCGATCTGCTCAAAGTCTTTCTCCACCAGACCCCTCGAGGTCATCGCGGGGGCACCAATGCGGACACCACCCGGAGCCAATGCACTGCTGTCACCAAAGACAGCATTCTTGTTCAATGTGATGTGGCAAAGGTCACAGAGCTTTTCAACCTTGTTTCCTGCAGACATAAGCCAACATTAGGAACAAGTTATAATTATGTACCAAACAAAATGAAACCCAGGTTGGATTAATCCATATACCAGTTAAGGCAAAAGGGCGAAGATCCCAAAGAACAAGTGGTTTTTCAGTTCCATCAGTCACCATTCTTGTAGCCCTTGGTCATGAAATAGTTTCCAATGGCAACCGGAATTTGCTTTTCATTTGCTTTGCATAGGCCCTTGGAACCAGTGGTCATA | |||||||||
gi|164075530|gb|EB660286.1|EB660286 1Z6III_JF_G05 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): CCAAAAAATCCCCACAGCGCCGCGCTCCCAAATTAGCCGCAGCATCGATGGCGCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGAGGAGCCCGCGGCCGAGAAGGCTCCGGCGGGGAAGAAGCCCAAGGCGGAGAAGCGCCTCCCCGCGGGCAAGTCCAGCGCCGGCAAGGACGGCGAGGGCAAGAAGGGCAAGAAGAAGGCCAAGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTGCACCCGGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAATGATATCTTCGAGAAGCTCGCCGGCGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCAACCATCACCTCCCGCGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCTGGGGAGCTCGCGAAGCACGCCGTCTCGGAGGGCACCAAGGCCGTCACCAAGTTCACCTCATCTTAGATAGGTTGCCGTGCTTGTGTCGCCAAGTTTGGTTGGGTGTGGTGGCTAGTACTGGCTCGCTCCCATGTTATATTGTAGCAGTATTATATTGTCATCAGAACTGTTGGATGGAAATGGATTCCTAGTATTTAGTTTGGTTAATTGTGCTAGTGCTTTTGATATGCTGCCCCCTAATGGATCTTGAACGGTATGGTGCCTGTTCTATTATTAATAAAAAAAAAAAAAAAAAA | |||||||||
gi|164136030|gb|EB657751.1|EB657751 26X_JF_E08 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): CCGCAGCCGATGGCGCCCAAGGCCGAGAAGAAGCCCGCCGCCAAGAAGCCCGCGGAGGAGGAGCCGGCGGCCGAGAAGGCCCCGGCGGGGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAAGTCCGCCGGCAAGGACGGCGAGAAGAAGGGCAAGAAGAAGGCGAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCCGACATTGGTATCTCCTCCAAGGCCATGTCCATCATGAAGTCCATCATCAACGACATTTTCGAGAAGCTGGCGGCGGAGGCGGCCAAACTCGCGCGGTACAACAAGAAGCCTACCATCACCTCCCGCGAGATCCAGACCTCTGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGGCCAGCTATGCCCGACTGTGTAGTAGATTCCTGTCTCTTGTTTCATGTGCAACCTGCTCATCGCAGTTACGGAACTTGGTTCCGACGGATGCTGTGGTTAGGTGTTCTAGATGTGTTCTCCTGTAGGAAAGTACCTGTTTTGATTTGAACAGAGATGTTATCTGATGTAATGGCAATGGTGCTTATTTAAATCAGCTATGTGTTTGTGGAATATATTGTTAATCCCTTGATGTTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|164139294|gb|EB652753.1|EB652753 4W_JF_A03 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence GCGAGCTTCTCGAAGATATCA EST sequence (targeted fragment marked with yellow): GCAGGTCCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCGCGTAGATGAACCCGTCTGCTCGTGTGGCCTGTTGCTCCTGGTAGTCGTGCTAGTTCCAGGAATTTGGGTGGAGTGGATTGTGTAGTTAGATGTTGGGCTTCCTGATCGTGTTCTTGCTGTATGAAGGGAACTAAGTTATCTGATGGAATTGTAATGGTGCTTATTTAACTTTTGTGTTCAATTCATACTATCTGCTTCTGAAAAAAAAAAAAAAAAAAAAAA | |||||||||