| mature miRNA: GGGCTCACATGTCAGTGAGAG species: Cenchrus ciliaris database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27532469|gb|BM084560.1|BM084560 pPAP_08_F06 Apomictic pistil cDNA library Cenchrus ciliaris cDNA 5', mRNA sequence GGGCTCACATGTCAGTGAGAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTAGAACAACGCCCAATGAAGGTCCACATGTCAAATTGCCACAGTCACCCCATCGCTAACTGACATGTGAGCCTGGGGCACATAGCAGTAGAACAAGCTGCTAAATTTTCTTTTCTTTTTTCTTTTTTTTTTAACAGAAGCGAGTGGCTAGGCAGCTATCAGAAGCAACCAACTACTCTACACGAAAATTTTCTAGTTACTTTAGTAGCTACAATAAATCTGATTCGGTCATCTTACAATTTCAGTCACAAATTGGGCAGTGGCCCCTCGTCATGGTCGCCCTTGTGGAGATTGTGCAGGATGTAGAGAGAAGCCGACGACAGGAAGATGCAGACCGAGTAGCTGAGGAGGTCCATCCCTGTGGCTATCTTTACCGGCTTGCTCCTCTCGAACATCTTAACCAGCAGAATCATCACAATGACATGCCCAACTTTGGTCTTGAGCTCGACGAGGGACGTGATCTTCATCCACTTTGGCCGTGCCTTTAAAGCGAACATCCCGAACAACGACGATTTGGTGAGGGCACGGACCGATTTCGAGGGCACATTGTTGGAGGCATTGGTGATGAACAGCCCCGTAAAGACCCCTGCGCAATATCAGCATGACCCGTTCCAGCCAGATACACATTGGGTGGCCTCGACGAACTTGGAGGACCATCTTGCCCCAGATGAATTCCCTTGGACCAGTTCGGCCCCAAAACCTGGGGAGGGCCTTTTTGTTGAAGACCCGACCGTTGGAGGGAGCCCAATCCGCGAGCCGCGCACCGATCCGGGTCATTGTGGAGATGGGCAGGGATATGGTAAACCTGTATACCCCCTTTCTGAGAGGTGGGGTTTAGTATAACGGTGGCCTTATACGGGGGAGCTTGCCGGGAGGAGTTCCCAAAGTCCCGTGGTTTCCCGTCCCGCCGAAATACCCCTTAACGCCTGGGTCTTGACGACACGG | |||||||||
gi|164219695|gb|EB659360.1|EB659360 4X_JF_F08 pAPO Cenchrus ciliaris cDNA 3', mRNA sequence GGGCTCACATGTCAGTGAGAG EST sequence (targeted fragment marked with yellow): AAAAAATGAAGTTAATTGTTGTTGGTTGCTTAATTTTGTTGAAGACCTATCACTATCAGTCAAAGTAGCTTGTTTGCCTTTAAAATATAAATCATTCATTATGTAGGGATCCTCACATGCTTGGTGAGCAGGGATGAGTCTCCTCTGCAGTACTGCAGAGGGACTACTCTCACTGACATGTGAGCCCGGCTGTGATTTGGCCCGCATGTCATTGAGTGTGAGTCCCTCTGAGTACTTAGGATTCGTTTCCGGTGAGAAGGCACCAGAACATGATTGAGGACCCATCTATTGCACCAGCCAAAGTAGTTGGAGTGCCCAAACAAGTTTCGATGGGATTGGCAACTCGGGTACAAATATCCCCCAGCGATGAAAGTCAGAGGTCCCTCGAGAACTTAGTCATGACGGCAGAAGATAGAACAGATATGAGGTGATGAAAAGCTCCCTCCAGCTGAACAGTTGATCATTGCATTGGTTGATTTATGCTACTTTAAGACAGGCCATGTGTTGGTCATGTTACAGATGCAGATTTTTGTAAATGTGAAGTTGTGGACTACTTACCGTCTGTAACTCAAAATGTTTGCATAACTTTGACCCGATGAAATAGCACGACATAAAGCTTGCACCATGTTCCATCAAACCATATTTGCCAGCCATTGATTACTGTGATAAACTTGCAAAAAAAAAAAAAAAAAAAAAA | |||||||||