miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGACAGAAGAGAGTGAGCATA
species: Centaurea maculosa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|124655846|gb|EH750591.1|EH750591 CNMS9942.b1_L14.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMS9942, mRNA s 

TGACAGAAGAGAGTGAGCATA
||| |||||||| .||||| |
ACTATCTTCTCTAGCTCGTCT

EST sequence (targeted fragment marked with yellow):
GTTTTCTCACTCTCAAGTTTCTTCTTTCCATGGCAGGAATTCAAATCAAGCTCTTCGTCCTCCTACTCTGCTCGATCTCTTCTATCACTGATGCCATAGAAGTCAAGTATTGCAAAAAGAATAAAGATTATCCCGTCAAGGGCAGTGGAGTTGAGATTACTCCTTACCCGATACAAAGAGGCACAGATACTACCTTCACTTTGTCGGCCTCTACAGATACACCCATCATTGGAGGGGATCTTGAGATTGACGTTTCATACTACTTTTTTGATGTCTATGAGGAGACCAGTGACCTCTGCACTAAGACCGGACGCCCTGTTTCTGTTGGTAACTTTGCAATATCTCACTCGCATTCCTTGCCTTCAGTAACTCCGCCTGGTTCATATACGCTCAAAATGAATCTGAAAGATGCTGCCAAAAATGAGTTGACATGCGTCACGTTTGATTGTCAGCATTGGCTGGTATAACGCTCAAGAGGCAGTGGCTGCGAGTTAAGTGCCTGAAATCTGTTTTCTCGACAAATCCATCAATAACAACTATAGTGCTATACTAGATCATCTCAGGTTTCCCTTCTGTTTACCGTTTCTGTGTAACATACAACATCTTTGCATTTGGTTGTGTACTACCTTTAAGGGCTTGACTACATCTTCATATATGTATATGATGAATGAGATGCTTTCCCGTGCAAAGAAGATAAAGATGCAATG


gi|124614460|gb|EH712593.1|EH712593 CNML12186.b1_C24.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNML12186, mRNA 

TGACAGAAGAGAGTGAGCATA
||||||||||||| ||||  |
ACTGTCTTCTCTCTCTCGGCT

EST sequence (targeted fragment marked with yellow):
GCGGGGGACCATGGATATACAACTCGACAATAGGAAGTAGAAGTAGCCGTTCCGTTCACTAAAATTATAAGCGGGGTCGTCCAGGTTACTTAGTGGATTCTGAGTGGGAGTAGGAACTTTTGTAAAAAGCTTTGAGATCGGCTCTCTCTCTTCTGTCAAACCAAAAATAGGCTTTTCTCTTTTGTAAAATGGAGGAAGGCCCACGAAAGGGAACAGCTCTCAGTACAAGAAGGCGGGTATTGATCAGGAACGTGGAGTTGCTTCCATACTTCCTGGTCGCGCGTCGGTTTACGGTGGCCGATCGAGGAGAAAAACTCCCTAGGAGATTCATAAAATATTGAATCTTGCGCATGTCGGGCGAAGAGGGCGGCTCCATACGGTATCAAAAGCCCAATAGGAGGAGTTCTAGGACAAGGGGCAAAAGCGATTTTCCCTTTGTACGGAGAGGTTTTTTTGTTTTGATCGTAAGCGGGTAACCCCCCAGCTGAAAAGAACAAAAAAGCTTCAAAACTCCTTCTATATGGGATACCGGTGGTGAGTCAAAGCTGAGTTTGACCCTCGTCAGGCAGCATTGGAAGGGGGAGGGCTTTGTTGTGCAATCAAGAAATAAAAGCAAACAAGAGCCACAGTTAGGATATCTATAAAGGGCTATAATGCTAGAAGGTCAACCCTTATCTCATTGATCTCCCTTCGGTCATCAATGTCGGGTTG


gi|124647821|gb|EH743037.1|EH743037 CNMS2719.b1_M07.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMS2719, mRNA s 

TGACAGAAGAGAGTGAGCATA
||||||||||||| ||||||
ACTGTCTTCTCTCTCTCGTAA

EST sequence (targeted fragment marked with yellow):
TCCTTTTTCTTAAGACTGTATTTCACTCTCTTTCTAGGGCATGGAAACAACGAAATCCGGAAGGGTAGTCAGAAGCATGAACGATAGGTTGAAAAATGAGATGATGGAAGAAGGGGAAGAAGATGATGACGAAAACTTTGGTGAGGGTAGTAGGAAGAAGAAGGTATTGGGAAAGAGGGGGTCGGGTAGTGGAGGGTCCACCATACAGCCTTGTTGTCAGGTGGAAGGTTGCACTACCGATATGACTAATTGCAAGACGTACCACCGGCGGCATAAGGTATGTGAACTTCACGCTAAGGCTCCAATTGTCATCACCGGTGGATGTCAGCAGCGATTCTGTCAGCAATGCAGCAGGTTCCATGACCTAACAGAATTCGATGATGCTAAAAGGAGTTGTCGTAGGCGTTTGGCTGGACATAATGAACGCAGGCGTAAAAGCTCCTATGAAACTTATGGAGAAGTTCCTGATTATAAATGAGAAAAAAGGAGTTCTTAATGATGAAAACGAGATGTTTAGAGACATTTCCAAGAAAGAGCCTCACCAACTACTCATAAATAAGACAATATATAACTATGTTCGCTAGCAATGCTCTCTCTCTTCTGTCAGTCCATTAACTTCAATTATCTACAAGTGTTGGTGATGTGTAAGTATATATGATGAACTTCGTAAGGATATCCGAAGCAGTACAACCGTGTACCAGCCAATTAATTATACTATCTTTATGATCACTTTCTGTGTGCAAATAGAAGCAAATTTATGATTTGTAATTTGTATGCAAAGACGATATCGACCATGAGAGCAAGTGCTTGTCATATGTA


gi|124620288|gb|EH717854.1|EH717854 CNML4456.b1_O10.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNML4456, mRNA s 

TGACAGAAGAGAGTGAGCATA
||||||||||||| |||| |
ACTGTCTTCTCTCTCTCGCAC

EST sequence (targeted fragment marked with yellow):
ATAAGAAAGCATATAACCAACTTCTGATCAAATAAGACTAATAATTATATATCGAGTAGCACGCTCTCTCTCTTCTGTCAGTCCTTAATTGGACTTCATTAAGTATCGGTTATTTATGTTTTTATCCATATTTAGTATTACGGTTTAGCTAGAGCTTCACCTATTTTCGGCGCATGGCCCACGGTTGTACTTCATAAATTGATGGCATTAGCGAATAAAGTGAACTCACCTTCCA


gi|124646904|gb|EH742185.1|EH742185 CNMS1860.b1_H10.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMS1860, mRNA s 

TGACAGAAGAGAGTGAGCATA
||||||||||||| |||| |
ACTGTCTTCTCTCTCTCGCAC

EST sequence (targeted fragment marked with yellow):
GGGGGACAGAAGATCTGGAAGGGTGGTGAGGAGTATGGACGACAAGTATAAGAACGAGATGATGAGAGAATGGGAAGAGGATGACGATGGAACAACTTATTTGGAGGATACTAGAAAGAAGGCAACAATGGCAAGGAGGGGCTCCGGCAGTGGGGGGCCCACACAGCCTTTTTGCCAGGTGGAAGACTGCACCACCGATATGAGTCGGGCCAAAACATATCACAGGCGACACAAAGTCTGTGAGGTTCATGCCAAGGCTCCAATTGTTGTAATCGCCGGACATCAACAGCGTTTCTGCCAGCAATGCAGCAGGTTCCATGACCTCACAGAATTTGATGACACCAAAAGGAGTTGCCGTAGGCGCTTGGCTGGTCATAACGAGCGAAGACGTAAAAGCTCCTATGAATCCTATGGAGAAACTTCTGGATGATAAAGAAAAGCATATAACCAACTTCTGATCAAATAAGACTAATAATTATATATCGAGTAGCACGCTCTCTCTCTTCTGTCATCCCTTAATTGGACTTCATTAAGTATCGGTTATTTATGTTTTTATCCATATTTAGTATTACGGTTTAGCTAGAGCTTCACCTATTTTCGGCGCATGGCCAACGATTGTACTTCATAAATTGATGGCATTAGCTAATAAAGTGAACTCACCTTCCAAAAAAAAAAAAAAAAAAG


gi|124651081|gb|EH746068.1|EH746068 CNMS5596.b1_G08.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMS5596, mRNA s 

TGACAGAAGAGAGTGAGCATA
|||||||||||||.||.||||
ACTGTCTTCTCTCGCTTGTAT

EST sequence (targeted fragment marked with yellow):
CGGCCGGGGCCACAATTAAATAAATGGAGACAAAAGTTACAAGGTTTCCTCTAAAGAAAAATGGAGTATGATGAAAAAAAGTTAGTGAATGATAACTATGTTAATGAGTTGATCGACGGTAGCGGTGGTGAGGATGGTGGCAGTGGTGGTGGTGGTGGTTCTTCAAATGGGGATGTGAAGAAGAAGAAAGGAGGTGACAATGGTGGTGGATCTACTGGTGCCACTAGATGTTGCCAAGCCGAGAAATGCACAAGTGATTTAGCTGAGGCTAAGCAGTATCACCGAAGACATAGGGTATGCGAGTTTCATGCAAAGGCTCACGTTGTTGTTGTTGCTGGCATTCATCAAAGATTCTGTCAACAATGTAGCAGGTTTCACGAGCTACCGGAATTCGATGACACCAAGAGAAGTTGTAGGAGGCGTTTGGCTGGACACAACGAAAGGCGAAGGAAGAACTCGATCGAGTATAAAGGTATGACCACTGATAACGGAAGGTTTCAAATGACCATCCAAGACAATGCAGCTTCAACTTACAACCATTTGCAGCAAACCAGGTGAAAAACAAAAAGACCCCCCGAAAAACCAACCAAGCCACGAAACGAANACCTATGTTCGCTCTCTTCTGTCATTTCCTAGTACTTAATAAAAAATATCGTGTTGAATGAAATAATAATAACCGAAGGATTATGTAATAAGATTATGCTCGAATTCTATGATATTTAAACACTTCCTTTATATAACCGAAGGATTATGT


gi|124614324|gb|EH712475.1|EH712475 CNML12078.b1_L19.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNML12078, mRNA 

TGACAGAAGAGAGTGAGCATA
|||| |||||||||||| ||
ACTGACTTCTCTCACTCATAC

EST sequence (targeted fragment marked with yellow):
AGATGTGTACAGCTCACCGCTACTCCACCAGATCGATCTCTTCTCTCTCCATCTTCACTCTTTTTATCAACCAATTTCTACCACCATTGCTGCTCTTCTTCATCATCATACTCACTCTCTTCAGTCATAAAATGGACAGAGATTCTTCCGACGATGAAGAAGATCGCCGCCATTTGATTCATCAGAATGAAACTATCCCTAAATCTCCTCATCGTTCTACCTTCCAGATCGATGAAGACGACCGCAACCAGTTTAAGAGCCCTCGTCACTCCTCCTATGCTAATAATTTCCCCAATTTCAATAAGAGGTACCTGTTTGCTATTACTCTCCCTCTCATCATCATCTTCATTTATTTCACCGCTGATTTCAAATCCCTATTCCGTACAAATCTATCTTCCGATTACGACCAACACTCTGCGGCTGCTTCTAATCTGATGCGTGAGTCCGAATTGCGAGCTCTATACCTGTTAAAACACCAGCAATCACGTCTTCTTGATTTATGGAACCGTACTGCTACTGTAAACTCCAATTCCACTGACTCCTCCAATTCATTTCAAGATCTTAGATCTGCTCTTATTGATCAAATCTCATTGAACAACAAAATCCAGCAAGCTTTATTGTCCACGCATCAGTTGGGGAATTTGGTTGGATTCCGGAGAACATAATAATGTTACCAACCCTAACCTAGCTGGTTTAACTGCTTGCCAAAAGGTAGACCAGAAATTATCTGATAGGCGAACGATAGATTGGAACCCTAAAA