miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGTGTTCTCAGGTCACCCCT
species: Centaurea maculosa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|124637048|gb|EH733141.1|EH733141 CNMM5986.b1_C10.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMM5986, mRNA s 

TGTGTTCTCAGGTCACCCCT
||||||||||| |||||||
ACACAAGAGTC-AGTGGGGC

EST sequence (targeted fragment marked with yellow):
TTGGCGGGGGAGATCTTCTGTAACCCCCCGCCCTCTATTAGTCTCCCACCAACATTTCTTTTCTTTTATTTTCTTGATCGATCACAGATTCCCATTTACCTTTTTGTGTTTTCTTGACTCGATCGCTTCTGGGTCTTCAATTTTGTTGAGTCTTTAAAGGTTTTTTGTACAAAAAGACGATCAAAAAATGGCTTCATATGGAGGAACTACACAAAAGTGTAAGGCTTGTGAGAAGACTGTTTACTTGGTGGATGAACTCACTGTTGATAATAAAGTTTATCATAGAGCTTGTTTCAGATGCCACCATTGCAAGGGCACCCTCAAGTTGAGTAATTATAGTTCTTTTGAAGGAGTGCTATACTGTCAACCTCACTTTGATCAACTCTTCAAAATGACCGGAAGTTTGGATAAGAGTTTTGAAGGTACCCCGAAAACTGCTAGAGCTGATAGATCCGATCAGGGCCAATCTAACAGCAAAGTATCAAGTATGTTCGGTGGAACACAAGATAAGTGCGTAAATTGCAAGAAAACCGTCTACCCGCTTGAAAAGGTGGGTGTCGACGGAACTGCTTACCACCGGGCCTGTTTCAAATGCAGCTTCGGAGGGTGCGTGATAAGCCCGTCAAACTACGTGGCTCACGAGTATCAGCTGTACTGTAAGCACCATCACGCGCAGCTCTTCATGGCCAAGGGAAACTTCAGCCAATTCGATAAGCAACACGATCAAGATAATAATAGCAAGGTCGTGGTAGTACCCAACGGGGTGACTGAGAACACAACG


gi|124650125|gb|EH745169.1|EH745169 CNMS4775.b1_N17.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMS4775, mRNA s 

TGTGTTCTCAGGTCACCCCT
|||| ||||||. |||||||
ACACTAGAGTCTTGTGGGGA

EST sequence (targeted fragment marked with yellow):
CGAGAGTATCGACTGCTATCTCTCTCTCTCTCTCTCTCTCTATTTCACACACACACACAGAGACGTGTTGCAAGGGGTGTTCTGAGATCACATTCAAAAATGGTGAAGGCAGTTGCGGTTCTTAACAGCAGCGAGGGTGTCAGTGGCACCATCCAATTCAGTCAAGAGGCCGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACCACCAATGGATGCATGTCAACTGGACCTCACTACAATCCCCATGGAAAAGAGCATGGCGCTCCTGATGACGAAGTTCGCCATGCTGGTGATCTTGGAAATGTCACAGTAGGCGACGATGGTACCGCAAACTTCACCATTGTTGATAAGCAGATTCCGCTTATTGGATCTCAATCCATTGTTGGAAGGGCTGTAGTTGTCCATGCAGATGCTGATGATCTTGGAAAGGGAGGCCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGACTGCAGGGTTGATTTCTGTGTTCATCTTTCTTCCATATTGCCAGGGAATACTGAGGCTTGTTTTTTTTGAAAAATCTATATGTATCCCCAAAGCTATGGCTGTGCTTGTACTGCATTCTTCAATAAACTATTCCCTGTGCCAAAAAAAAAAAAAAAAAAG


gi|124624828|gb|EH721849.1|EH721849 CNML8227.b1_F17.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNML8227, mRNA s 

TGTGTTCTCAGGTCACCCCT
|||| ||||||. |||||||
ACACCAGAGTCTTGTGGGGA

EST sequence (targeted fragment marked with yellow):
TATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTCACACACACACACACAGAGACGTGTTGCAAGGGGTGTTCTGAGACCACATTCAAAAATGGTGAAGGCAGTTGCGGTTCTTAACAGCAGCGAGGGTGTCAGTGGCACCATCCAATTCAGTCAAGAGGCCGAAGGTGCTCCCACTACTGTTACCGGAAACCTTTCTGGCCTTAAACCTGGACCTCGTGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGACCTCACTACAACCCCCATGGAAAAGAGCATGGCGCTCCAGATGATGAAGTTCGCCATGCTGGTGATCTTGGGAATGTCACTGTAGGAGATGATGGTACCGCAAGCTTCACCATTGTTGATAAGCAGATTCCGCTTATTGGATCTCAATCCATTGTTGGAAGGGCTGTAGTTGTCCATGCAGATGCCGATGATCTTGGAAAGGGAGGCCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGACTGCAGGGTTGATTTCTGTGTTCATCTTTCTTCCATACTGCCAGGGAATACCGAGGCTTGTTTTTTTTTGAAAAATCTATATGTATCCCCAAAGCTATGGCTGTGCTTGTACTGCATTCTTCAATAAACTATTCCCTGTGCTTAGCTGATAAGAAAAAAAAAAAAAAAAAAG


gi|124624680|gb|EH721712.1|EH721712 CNML8086.b1_K05.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNML8086, mRNA s 

TGTGTTCTCAGGTCACCCCT
|||| ||||||. |||||||
ACACTAGAGTCTTGTGGGGA

EST sequence (targeted fragment marked with yellow):
TCGACTGCTATCTCTCTCTCTCTCTCTCTCTCTATTTCACACACACACAGAGACGTGTTGCAAGGGGTGTTCTGAGATCACATTCAAAAATGGTGAAGGCAGTTGCGGTTCTTAACAGCAGCGAGGGTGTCAGTGGCACCATCCAATTCAGTCAAGAGGCCGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTTAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACCACCAATGGATGCATGTCAACTGGACCTCACTACAATCCCCATGGAAAAGAGCATGGCGCTCCTGATGACGAAGTTCGCCATGCTGGTGATCTTGGAAATGTCACAGTAGGCGACGATAGTACCGCAAACTTCACCATTGTTGATAAGCAGATTCCGCTTATTGGATCTCAATCCATTGTTGGAAGGGCTGTAGTTGTCCATGCAGATGCTGATGATCTTGGAAAGGGAGGCCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGACTGCAGGGTTGATTTCTGTGTTCATCTTTCTTCCATATTGCCAGGGAATACTGAGGCTTGTTTTTTTTGAAAAATCTATATGTATCCCCAAAGCTATGGCTGTGCTTGTACTGCATTCTTCAATAAACTATTCCCTGGGCTTAACTGATTGTCTGTTTTTGAATTGTGAGACATCTTTTATCCCCTGAAGGGACTATTTTCAAAAATACCTATGCTTCACTTC


gi|124632735|gb|EH729124.1|EH729124 CNMM15565.b1_I04.ab1 CNM(LMS) spotted knapweed Centaurea maculosa cDNA clone CNMM15565, mRNA 

TGTGTTCTCAGGTCACCCCT
||||||||||| |||||||
ACACAAGAGTC-AGTGGGGC

EST sequence (targeted fragment marked with yellow):
GCGGGGTACCCCCCGCCCTCAATTAGTCTCCCACCAACATTTCTTTTCTTTTATTTTCTTGAAACATATTCCCATTTACCTTTTTGTGTTTTCTTGATTCGATCGCTTCTGGGTCTTCAATTTTGTTGAATCTTTAAAGGTTTTTTGTACAAAAAGACGATAAAAAAATGGCTTCATATGGAGGAACTACACAAAAGTGTAAGGCTTGTGAGAAGACTGTTTACTTGGTGGATGAACTCACTGTTGATAATAAAGTTTATCGCAGAGCTTGTTTCAGATGCCACCATTGCAAGGGCACCCTCAAGTTGAGTAATTATAGTTCTTTTGAAGGAGTGCTATACTGTCAACCTCACTTTGATCAACTCTTCAAAATGACCGGAAGTTTGGATAAGAGTTTTGAAGGTACCCCGAAAACTGCTAGAGCTGATAGATCCGATCAGGGCCAATCTAACAGCAAAGTATCAAGTATGTTCGGTGGAACACAAGATAAGTGCGTAAATTGCAAGAAAACCGTCTACCCGCTTGAAAAGGTGGGTGTCGACGGAACTGCTTACCACCGGGCCTGTTTCAAATGCAGCTTCGGAGGGTGCGTGATAAGCCCGTCAAACTACGTGGCTCACGAGCATCAGCTGTACTGTAAGCACCATCACGCGCAGCTCTTCATGGCCAAGGGAAACTTCAGCCAATTCGATAAGCAACACGATCAAGATAATAATAGCAAGGTCGTGGTAGTACCCAACGGGGTGACTGAGAACACAAAGGAAGTTTGATGATAACGAGATCGGGATTCGAAAAGGTCGGGATTTTTGTGTAT