miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGCATTTGCACCTGCACCTTT
species: Centaurea solstitialis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|124680808|gb|EH775548.1|EH775548 CNSM7834.b1_D15.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM7834, 

TGCATTTGCACCTGCACCTTT
||| ||||||| ||||||.||
ACGAAAACGTG-ACGTGGGAA

EST sequence (targeted fragment marked with yellow):
GTCATTTTCAACCCTATACCGCATCGATGACTCCCTTGTTCTATTCCCACTACCTAAAACAAGGGTGCAGTGCAAAAGCATGGGCTGATTTGATCTCTATCCGATTGACGAGCGCGATGATGTGAATCCGTTCGCCGATCACGGAGCTGGGCGCGGAGGCCCTGGCAAGACATATTATACTGGAGGTTCATTCTACACATCAAGTGTTCCCTCTGCTGCAAACTCTCGGCTATCACCTCTTCCTCACGAACCTGCAGATTTCTATGATAGGAGTGCCCCAGTTGACATCCCTCTTGATTCAGCTGCAGATTTGAAGAAGAAAGAGAGAGAGTTGCAATCCAGGGGAGCTGATTTGGGGAAGAGGGAAGAGATAGTAAAACGGAAAGAAGAAGCAGCTGCGCGAGCTGGTATCGTTCTTGAGGAGAAAAATTGGCCACCATTCTTTCCCATTATTCATCATGATATTGCAAATGAGTTCCCGATTCATCTACAGAAATTGCAATATGTTGCATTCACAACATACTTGGGATTAGTGCTCTGTCTTCTGTGGAATATTATAGCCACAACAACAGCTTGGATTAAAGGAGAAGATCCGAAGATTTGGTTTCTTGCTCTAATCTACTTCATCTCGGGAGTTCCACTTGCGTACGTGTTGTGGTACCGGCCTCTTTATCGTGCATTTAGGAGTGAAAGTGCATTGAAGTTCACTTGGTTCTTCTTATTTTACTTGGTTCATATTGGCTTCGTCATCTTTGCTGCAGATGCCCCTCCCGTTGTCTTCA


gi|124665788|gb|EH760528.1|EH760528 CNSL6623.b1_M23.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL6623, 

TGCATTTGCACCTGCACCTTT
||||||||||||||||||| .
ACGTAAACGTGGACGTGGACG

EST sequence (targeted fragment marked with yellow):
GATTTTTCGTTACTGAATACATTTCTCAAGAATTGAATCCGGTTTCATGGCTTTATGCAGTGCAAGTAGTACAGCTGCAGGTGCAGGTGCAAATGCAAACTCAATGGTAGATATAATGACGTTCGTAGGATCTGATGCACTAGCCGAGCTAGTTTATTCTCCACGTAAAGGATTAAGCATCAAATTTGCCGAAAAGAAACCTTGTTTTATGCGGGAAGTTGGTCCAAACAATATGGATTTTTTAGGGTCTGAAGACACTAGAGATCAAAAACACGTCAAGTGTTCAAGCCCAGTCGAAACACCGAAAAGCACAAGTCATGGACCCACAGGTCCACAAAACCAAAAAATAAGCGATCCATTACTGGAACGCTTGTTTGAAGATGGAATGACTAGCGGTGTTCACAAGTCGGATTCCAATATTATATCACATTTGAAAATTGAACCCCCGACACAACATGGGCCCCACGAACATGTGGAAAGGTCTAAAACCGACAAAGATAACGACCCTTTTCTTGAAAACACACAAGATGTTGAACGGGTCGGTTTGTTTCAACGTGAAGATAGGGAAAGATCGATTTATTCTCGAGAAACGGATCAAAAACTCGAGGTTGAGAGCCACGGAAGCATGGAAAGTTGCGAAAACGCTACTTCTCTGGCCAAAAGAAAGACGAGATTGACGTTCGAAGAACAATTGATTCATGGAACCAAAAGAATAAAGAAACAAGCCAATCATTATGATC


gi|124695224|gb|EH789960.1|EH789960 CNSS30004.b1_G13.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS30004 

TGCATTTGCACCTGCACCTTT
|||||.||||||| || ||..
ACGTAGACGTGGAGGTTGAGG

EST sequence (targeted fragment marked with yellow):
GCGGGGGACAGGGAGACAACATGGCGGTGGTGGATTGAAGAACTTGCTGTCAGGTGTGGTGGACGAAACGGTGGAAGAGTTGCTAAACAGGGAGGAAAACAGGGCTTTGTTAGATGGATTGGATAAAGCTACACAGAGAGTTGAATTGGCCAAGAGAGAACTTGCTGAGATCCAAAAGCAAGAAATCGAAAGCGAAAAGATGAAACGATACATCAATCAGCTCGAAACCAGAGCAGCTGAGATTGATGAATGCCAGAAGGAAATATCGGAAGCAAGAGCACTGGTTGAAGAAGCGGAGCGCTCTCTTGAAGTTGGAGTTGGAGGTGCAGATGCAACAATGACAGAAACAGAAAGAGAAGCGATGTACAAAAACAAAGAGAGGTTTGAATCTGTAAAAGCTGCTGCGGTTTCTGCCATTGTTGGCACCTTGGCAAGCTTGCCTATTTCCTTATCTCAAGTGACTGAAACTTCCCAGCTGTTACTCCCTTCAGCAATCACTCTCATCAGCTGTGCATTATTTGGTGTGACCTTCCGCTATGCTGTTCGTCGTGACTTTGACAATTTTCAGCTCAAGACTGGAACTTCTGCAGCTTTTGGCTTTGTCAAAGGCCTTGCTACCTTAGGAGGAGGCCCACCTATGGAGTTGGAAGTTGGTAGTGTATTGTCACATGCTTTCAGTGGTGCAGTTGTTGTATCCGAGAATCTTCTAATCTTTCTGTTTGCCACTGCTGGTTTGGATTTCTGCATTAAATTGGGGATTTTAAGTCCATTCCGAATTGAACATCAGATTCAAAAACAAAACGTGAATGAAACCGTCT


gi|124665788|gb|EH760528.1|EH760528 CNSL6623.b1_M23.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL6623, 

TGCATTTGCACCTGCACCTTT
||||..|||||||||| || |
ACGTGGACGTGGACGTCGACA

EST sequence (targeted fragment marked with yellow):
GATTTTTCGTTACTGAATACATTTCTCAAGAATTGAATCCGGTTTCATGGCTTTATGCAGTGCAAGTAGTACAGCTGCAGGTGCAGGTGCAAATGCAAACTCAATGGTAGATATAATGACGTTCGTAGGATCTGATGCACTAGCCGAGCTAGTTTATTCTCCACGTAAAGGATTAAGCATCAAATTTGCCGAAAAGAAACCTTGTTTTATGCGGGAAGTTGGTCCAAACAATATGGATTTTTTAGGGTCTGAAGACACTAGAGATCAAAAACACGTCAAGTGTTCAAGCCCAGTCGAAACACCGAAAAGCACAAGTCATGGACCCACAGGTCCACAAAACCAAAAAATAAGCGATCCATTACTGGAACGCTTGTTTGAAGATGGAATGACTAGCGGTGTTCACAAGTCGGATTCCAATATTATATCACATTTGAAAATTGAACCCCCGACACAACATGGGCCCCACGAACATGTGGAAAGGTCTAAAACCGACAAAGATAACGACCCTTTTCTTGAAAACACACAAGATGTTGAACGGGTCGGTTTGTTTCAACGTGAAGATAGGGAAAGATCGATTTATTCTCGAGAAACGGATCAAAAACTCGAGGTTGAGAGCCACGGAAGCATGGAAAGTTGCGAAAACGCTACTTCTCTGGCCAAAAGAAAGACGAGATTGACGTTCGAAGAACAATTGATTCATGGAACCAAAAGAATAAAGAAACAAGCCAATCATTATGATC


gi|124678486|gb|EH773226.1|EH773226 CNSM5682.b1_D06.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM5682, 

TGCATTTGCACCTGCACCTTT
|||||||||||||||| |  |
ACGTAAACGTGGACGTCGTTA

EST sequence (targeted fragment marked with yellow):
TTTCTTGGTAGGAGAAGGAACCGCTGCTCCTCAACTGGACGGAGCTCGCAGTAACTGCGGTGCAGGCCTAGATATCGGGGATTCTTTTACACTATGACATCCGGACAAGATTGCTGCAGGTGCAAATGCATGTGGCGCTGCTTATAGCTACTCGAGAATAAAGGAAGATGTTCAGTTGTTGAGGAAAATGGGCGTGAACTCTTTCAGATTCTCTATTTCATGGTCAAGAATATTACCAGGTGGGAAAGTGAACATGGGTAAAAATCAGGAAGGCATCAATTACTACAATAAATTGATTGACGAGTTACTATCCAATGGCATCGAGCCATTTGTCACAATTTTTCACTGGGATCTTCCTAATGCCTTGGAAGAAGAATACAAGGGTTTTCTAAGTTCAAAGATTGTGTCCGATTTTGTCAATTATGCTGATATTTGCTTTTGGGAGTTTGGGGATCGGGTAAAGAATTGGTTGACAGTAAACGAGCCACGTATGTTCATACATTACGGGTACGTAACAGGTACATGTGCACCTGGTCGAGGTGAAAAAGGGAAAGATAACGACCTTGAAACAGAGCCATATACCGTCGCATATAACCTACTCAATTGTCATGCAGCTGTTTATAGAAAGTATGAGAAAGATTATAAGGGTTTTCAAATGGGTAAAGTGGGAATCACCCTACATCTT