| mature miRNA: AGGACGTCCCCTTACGGGAAT species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|23361923|gb|BU649759.1|BU649759 1112082E02.y1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): GCACGAGGCTGCCAACTGCCGATATTTATATACTCCTAAGTTTACTTGCCCGAAGGGGAAGGAACTTGTTAGCCGATAGGCGAGGCAACTGCCTCCTTCGGAGTATATAAATATCGGCAGTTGGCAGGCAACTGCCACTGACGTCCACTACAATTTATTTGCCCGAAGGGGGACAAATTTATTTATTGTCCCGTAAGGGGCAAAGCATGGGAGTAGATAAATATAGGCAGTTGGCAGGCAACTGCCACTAATATTTATATTCCCGTAAGGGGACATCCCGATGGGGGCTAACAAATCTCTAATGGAGCTTTGCTTAGATTTTTATTTAAAAGGTAAACCGAATTCTTTTAATAATGCAAGACCTTCTTCTTGTGTTTTTGCTGTTGTTACAATTGAAATATCCATACCACGTACTTGATCAATTTTATCATATTCAATTTCTGGGAACATTAATTGTTCTTCTAAACCTAAACTATAATTACCTTTTTTATCAAAACTTTTTGAGCTAATACCTTGGAAATCGCGTACACGCGGTAATGCTAAATGAATTAAACGATCTAGAAAACCATACATACGATCACCACGTAATGTAACAGGTACACCTACGGACATTTGCTGTCTTATTTAAAGCAGCAAT | |||||||||
gi|15691892|gb|BI716181.1|BI716181 1031007G01.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): CAACTGGTTATAAAAAGATTTAACTTAATAAGCATTTTATTATAATATTACTCATATCAAATTTTAAAGAAGATAGAATTATTTTAATTTTATATGGAAATCCTATTCGCAATTTTCTACTAATTGCAAAGCATATCCCCCGAATTAAAAGGCAGGGGACATAAATGTCCCCGTAAGGAGACGTCCCCTGCCGTCCTTCCCCTTCGGGACGTCAGTGGCAGTTGCCTGCCAACTGCCTCCTTCGGAGTATTAAAATCCTATATTTATATACTCCGAAGGACGTCCCCTTCGGGTAAATAAATTTTAGTGGACAAATTTATTTATTGTTGCCTGCCAACTGCCGATATTTATATACTAGGCAGTGGCGGTACCACTGCCACTAATATTTATATTCCCGTAAGGGGACGTCCTCCTTCGGAGTATGTAAACATGCTAAGTTTACTTGCCCGAGGGANAGGGAAGGCAGNNGNCNGNCNNCTGNCTNCT | |||||||||
gi|9458950|gb|BE452606.1|BE452606 894064A06.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): GGGTACCGGNGCCCCCCCTTCGGCGCGATCACCTAAACGTAATACACGTGNGAACCATTTGAATAGCACCAGCACGACGACGTGGTTTTACTTCAACACGTGGTGTTACGTTATCTAAAGCTTTTTCGAAAACTTCTACTGGGTTTTTTTGTGTAACATCACCAATTTCTTTTAATGCGTTATAAACAATTCGATATGCTACAGATTTTTTACCACTTTTTAAAACACGGTTTACTAACATATGTACTGATACACTGTTATAAACTGGATCTGGTAATAAAGTACGTTTTTTATTAATGGGACGACGTGGCATTTTTATTTTAAAAAAGCATCATTATTTTTACTAAATGGTTAAAATAGATGCAAACTTTCATACCAAATAAGCAATTTTAGTTATGTGATGGTTTAATAGGACGTCCCCTTCGGGCAAATAAATTTTAGTGGATATTTATATACAATAAATAAATTTGTTGCCTCGCCTATCGGCTAACAAGTTCCTTCGGAGTATATAAATATAGGCAGTGGCGGTACCACTGCCACTAATATTTATATTCCCGTAAGGGGACGTCCTGCCAACTGCCTCTTTGAAAATCGCTACTTAATAGATATGCATATAACTAAGTTTACGATATCAAAACGAAATTACCAACT | |||||||||
gi|22059415|gb|BQ813413.1|BQ813413 1030036C05.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): TTTTAGTATATAAATTTTTTAAACGTTGTGTCATATTAAAAAAAAATAAAATGCACATATAGATAATGTTAAGCCAAAAGGTAATGCGCTATACAATACAATATAGCAATTTATTTAGCGAGGATACAGTAAATATTTAGATATCCGTAAGGGGACGTCACCTTAAAGTAAATAAATTTTAATGAAAGTTACACCGCCTACTGCTTTTATGAGAGCTATCATTTTGGCTTTGCATTATGTGTTCTTTTTATCCAAATCAACTGGTTATAAAAAGATTTAACTTAATAAGCATTTTATTATAATATTACTCATATCAAATTTTAAAGAAGATAGAATTATTTTAATTTTATATGGAAATCCTATTCGCAATTTTCTACTAATTGCAAAGCATATCCCCCGAATTAAAAGGCAGGGGACATAAATGTCCCCGTAAGGAGACGTCCCCTGCCGTCCTTCCCCTTCGGGACGTCAGTGGCAGTTGCCTGCCAACTGCCTCCTTCGGAGTATTAAATCCTATACTGATATACTCCGAAGGACGTCCCCTTCGGGTAAATAAATTTTAGTGGACAAATTTATTTATTGTTGCCTGCCAACTGCCGATAT | |||||||||
gi|22059199|gb|BQ813306.1|BQ813306 1030035D03.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): TCGGCACGAGGGGTACAATAAATAAATTGTATGTAAACCCCTTCGGGCAACTAAAGTTTATCGCAGTATATAAATATCGGCAGTTGGCAGGCAACTGCCACTAAAATTCATTTGCCCGAAGGGGACGTCCACTAATATTTATATTCCCGTAAGGGGACGTCCCGAAGGGGAAGGGGACGTCCTAACGGAGCATTAAAATCCCTAAGTTTACTTGCCTAGGCAGTTGGCAGGATATTTATATACGATATTAATACTTTGCAACTGCCACTAAAATTTATTTGCCCGAAGGGGACGTCCTTCGGAGTATATAAATATCCCGTAAGGGGGAAGGGGATGTCCCGTAAGGGGGGGGAAAAAAAAACNCAAACAGAGGTGGAGCTTCTTTAGTTTCCTAGGCATTATTTAAATATTTTTTAACCCTGGCACTAGAACTGAGATTCCAGACGGCGACCCGTAAAGTTCTTCAGTCCCCTCAGCTTTTTCACAACCAAGTTCGGGATGGATTGGTGTGGGTCCAACTGAGCAAAGAGCACCAAGGTTAACTAGCATCTCTGTGAGATGCTAGTTAAACTAAGCTTAGCTTATAAACGATAGTTACCCGCAGGGNGTTATGTAATTATATTATAAAGGTCAAAATCAAACGGCCTTTAGTATATCTCGGC | |||||||||
gi|23367358|gb|BU655176.1|BU655176 1112118C11.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): TTATGTTCAAGATAGCTCGCTAGACTATCTCCGTTAATCTATTAAGCCATCCCCTGACGGGAATATAAATATTGCTTAATGCATAACTGCTTTATATGACTATAAAGATCAGACCATATCAATATCCTGTATCACCTTCGTATGCCAGAAGGTTTTTCCCTTACGGGGATATATTATGAAACAGGATAATCGTCGTTTCGGTGCGCTTGCACCTACTCTCTTGCGAGATGGTCGTTAGACATTTATCTGAAAACTAAAATAATAATAAAAATCTTAGGACGTCCCCTTCGGGTAAATAAATTTTAGTGGACAAATTTATTTATTGTTGCCTGCCAACTGCCACTGACGTCCACTAATATTTATATTCCCGTAAGGGGACGTCCTTCCCCTTCGGGCAAGTAAACTTAGGAGTATATAAATATCCCTAAGTTTACTTGCCCGTAAGGGGAAGGGGAAGCAGGCAGTGGTACCGCCACTGCCTATAAAACCCCTTACGGGGAAGGTGAATTTTGTGTATAACCCGGTTTTCCGTTTTTGATATTTTTCGAAACAGCTTGAACTGAAATACCTATGGCTTTAGCAGCTGCACTTATAGATGGAAATGTTTGATTAAAGATACCTTTTTCTGGTAAATTAATTGTAACAGATAACGCTTGACCAGTTACATTACGTTTTTTTAAATTGCTTGTTTCACCTATTAAATGTTTATTATTTTTTTTACAGCGAATGGCATA | |||||||||
gi|22059434|gb|BQ813427.1|BQ813427 1030036D03.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): TCGGCACGAGGGGTACAATAAATAAATTGTATGTAAACCCCTTCAGGCAACTAAAGTTTATCGCACTATATAAATATCGGCAGTTGGCAGGCAACTGCCACTAAAATTCATTTGCCCGAAGGGGACGTCCACTAATATTTATATTCCCGTAAGGGGACGTGCCGAAGGGGAAGGGGACGTCCTAACGGAGCATTAAAATCCCTAAGTTTACTTGCCTAGGCAGTGGGCAGGATATTTATATACGATATTAATACTTTGCAACTGCCACTAAAATTTATTTGCCCGAAGGGGACGTCCTTCGGAGTATATAAATATCCCGGAAGGGGAAGGGGATGTCCCGTAAGGGGAAGGGGNAAGAGCTGCACGGTGCTGCAGGGTGCAGGGTACAGTCATGGCACACGCAGAGGGTGTCAGCTGCTGTGGCGCAGCGCTGCATAAAGCGGGCGGCTCCGCGGGCGGCTGCGCGGGCACGTGCGGTGTGGTGCCGGGCGGTGCGGATGCGAACTGGAGGCGGCGGCTGTCGGAGCTGCTGCCGCAGGCGCTGCCTGGGCTTCCCTCCTGCTGCACTGGCGCTGTCATGGCAGATGCAGTGGATGAGAGTGTATGCAGGCTGCGGACTGCATTCATGCAGCGTGTAAAGCGTGTGATGTGA | |||||||||
gi|15692555|gb|BI716860.1|BI716860 1031013B03.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): GCACGAGGGCGGTACCACTGCCACTGGCGTCCTATTTTAATACTCCTAAGTTTACTTGCCTAGGCAGTTGGCAGGCAACTGCCTCCTTCGGAGTATATAAATATCCACTAAAATTCATTTGCCCGAAGGGGACGTCCACTAATATTTATATTAGGATGTTAACACAATAAATAAATTTGTCCTCCTTCGGAGTATGTAAACATTCTATGTTAATACAATGTTAATACAATAAATAAATTTGTTGGCAGGCAACAAATTTATTTATTGTCCCGAAGGGGAAGGGGAAGGGCGTCAGTGGCAGTGGCCTGCCACTGCCAAACTTGTTAGCCGATAGGCGAGGCAACAAATTAATTTATTGTCCCGTAAGGGGACGTCCACTAAAATTGATTCTTTCTAGGCAACGTCCATTCCTATCTGTTTACGGATTATTAATGTCCTCATGTATTCATAGCAAGCAGCACCGTCAACTGCTTCAAATGTAAAAAAA | |||||||||
gi|22059415|gb|BQ813413.1|BQ813413 1030036C05.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): TTTTAGTATATAAATTTTTTAAACGTTGTGTCATATTAAAAAAAAATAAAATGCACATATAGATAATGTTAAGCCAAAAGGTAATGCGCTATACAATACAATATAGCAATTTATTTAGCGAGGATACAGTAAATATTTAGATATCCGTAAGGGGACGTCACCTTAAAGTAAATAAATTTTAATGAAAGTTACACCGCCTACTGCTTTTATGAGAGCTATCATTTTGGCTTTGCATTATGTGTTCTTTTTATCCAAATCAACTGGTTATAAAAAGATTTAACTTAATAAGCATTTTATTATAATATTACTCATATCAAATTTTAAAGAAGATAGAATTATTTTAATTTTATATGGAAATCCTATTCGCAATTTTCTACTAATTGCAAAGCATATCCCCCGAATTAAAAGGCAGGGGACATAAATGTCCCCGTAAGGAGACGTCCCCTGCCGTCCTTCCCCTTCGGGACGTCAGTGGCAGTTGCCTGCCAACTGCCTCCTTCGGAGTATTAAATCCTATACTGATATACTCCGAAGGACGTCCCCTTCGGGTAAATAAATTTTAGTGGACAAATTTATTTATTGTTGCCTGCCAACTGCCGATAT | |||||||||
gi|16434004|gb|BI999230.1|BI999230 1031072A02.x3 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei AGGACGTCCCCTTACGGGAAT EST sequence (targeted fragment marked with yellow): GGCCCCCCCTTCGAGTATTNCAACAAAATGGTCAGTTGAATTTACTTTTGCTCAAATTCATGGATTTACTAATACACGTGAAATTTTAGAATNAGTAACACGACCTCTTAGACGCAATCTAATGTCNAATCAATCTGTAAATGCTATTTCTTAATATAANNCCCAAAAGATTTTTTTTATAATACTGAGACTTNAACACTTACTTGTTTTTATTTTTTGTAGTTANAATTCACTCACGTTAAAGACATTGGAAAATGAGNCAGGACGTTAGTCGATATTTATACACTCTTNAGTTTACTTGCCCAATATTTATATTAGGACGTNNCCTTCGGGTAAATAAATTTTAGTGGCAGTGGNACCACCACTGCCTATTTTAATACTCCGAAGCATNTAAATATACTTCGGAGTATATAAATATCCACTNNTATTTATATTAGGCAGTTGGCAGGCAACAATAANNAAATTTGTCCCGTAAGGGGACGTCCCGAAGGGGNNNGGGAAGAAGGCAGTTGCCTCGCCTATCGGCTAACANNTTCCTTTGGAGTATATAACCGCCTACAGGTAACTTNNAGAACATTTGTTACCCGTAGGGGTTTATACTTCTAATTGNTTCTTCTGAACAATAAAATGGTTTGTGTGGTCTGGCTAGGNACTGTAAAATGTGTATGTCCTTTCGCTTCCCCTTCNGGA | |||||||||