| mature miRNA: ATGCAAACATGACCCTGAATG species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22075750|gb|BQ824526.1|BQ824526 1030119C03.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona ATGCAAACATGACCCTGAATG EST sequence (targeted fragment marked with yellow): TCGGCACGAGGCGCCGCTAGGCCTCGGCTTTGCGTCGGAAGATGCCTTCCAGCATGGCCACGAGCGGCAGCGCAAGCGCCACACTGAGCGCCACACGCACGAGCGGGACAATATCGCAACGCCGCGCGACCAGAGCTGGGATCTTTCCGGGCCAACAGCGCCCATGGACATTGTAGAAACTCCAAGCGGGTATGAGTTGCATGCCGACGCCCCGGGCTTGGGCCCACGCGACGTGAAGGTCGAGCTGCATAACGGCGTTCTCCAGATCAGTGGCTCCCGCAAGTTGCACCACGAGTCCAAGGACTTGCGCGGCCGCCTGCTCCGTCGCGAGCGCACCGCCTACAGCTTCAGCCGCGCCTTCAGCCTGCCGGAGAACGCCAACCCGGACGGCATCACCGCCGCCATGGACAAGGGAGTGCTGGTGGTCACCGTGCCCAAGCGGCCGCACGCTACTGCCGGGCCGCCGGCGCCCAAGCGGATTGCGGTGGCGGCGGCGCCTGCCGCGAAGCTGTAGTAGCGGCGAAGCTGTAGCATCGTGAGCTGCCCCGAGCCGGCCAGGGTTCAGGGATGGGATTGGCTGCCGGTACGCCAACAATAAGAGACATGGAGTCATGGATGCGCGGCAAATGACTGTTACTGGGAAGTCTCTAGGCTTATCAGGTATATACGGTAAGGTTCATGTTTGCATGGGTTCGCAGGCTGCTTGGG | |||||||||
gi|22060588|gb|BQ813838.1|BQ813838 1030039C03.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona ATGCAAACATGACCCTGAATG EST sequence (targeted fragment marked with yellow): TCGGCACGAGGTGCATGCCGACGCCCCGGGCTTGGGCCCACGCGACGTGAAGGTCGAGCTGCATAACGGCGTTCTCCAGATCAGTGGCTCCCGCAAGTTGCACCACGAGTCCAAGGACTTGCGCGGCCGCCTGCTCCGTCGCGAGCGCACCGCCTACAGCTTCAGCCGCGCCTTCAGCCTGCCGGAGAACGCCAACCCGGACGGCATCACCGCCGCCATGGACAAGGGAGTGCTGGTGGTCACCGTGCCCAAGCGGCCGCACGCTACTGCCGGGCCGCCGGCGCCCAAGCGGATTGCGGTGGCGGCGGCGCCTGCCGCGAAGCTGTAGTAGCGGCGAAGCTGTAGCATCGTGAGCTGCCCCGAGCCGGCCAGGGTTCAGGGATGGGATTGGCTGCCGGTACGCCAACAATAAGAGACATGGAGTCATGGATGCGCGGCAAATGACTGTTACTGGGAAGTCTCTAGGCTTATCAGGTATATACGGTAAGGTTCATGTTTGCATGGGTTCGCAGGCTGCTTGCAGGCGGCATATGGGTTTGTCAGTTTGCTGTGTGGCCTGNGGGTTGTGTGACGATTCGCCTGTCACCTGGCGNCTGA | |||||||||
gi|15370003|gb|BI529429.1|BI529429 1024098G01.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN ATGCAAACATGACCCTGAATG EST sequence (targeted fragment marked with yellow): TTTTTTCTCGTTGGAGCGTTACAGCAAGCGCCAGCAGGTTGGGGGGCCGCAACCCCGGCAGGAGGCAGCGGGGTGTAGGCCCAGCCTTGCCCGCAACTGCTAATTTTGTTGCACTCACCACTGCCCCATTGTCCCAAAGCCATCCCATGTAGGCGCCCCTGCTGGCCTAAAATACCCACGTAGCCGCCCACGGATACAAGGCCCGCATTTGTTTAAGTCCGAAGCACGCAACTTCCACCCTGGTCCGAGTCAGCGTCATGTCAACATATTCTTAGGGCCCATACTACGTATGTACAATAGGGCACATGCCATCACAGCCACAGTCAGGGTCATGTCTGCAGGTCATATGTGTGGGTGCACATGCGAGCACCCCACGCGTCCGATGCATCACCACACGTAAATGATGGGGTTTAAAATGAATATGCCAAAGGCCGGCGCAGGGGCGCACCTTCACCACAGGCCACGCAACCCCAGCCCC | |||||||||
gi|15694809|gb|BI719114.1|BI719114 1031035D03.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei ATGCAAACATGACCCTGAATG EST sequence (targeted fragment marked with yellow): CTAAAGGAACGCCCAGATCGTGGTCATAAATGCACAATAGAATGTAGCAAAAAAGCGTACCTGGGCATCCCAGCGCTGCCGCCGAGTCCGTCGTGAATCCGTTGAGGAACTTGCCGACGTAGTATGTGTCGTAGCCGGCAGCCTGCATTGGGTGGGTCGTGAGGTGCTGGTGAACATACGGTGCCCTTGCTTCTCGCAGCAAGCATGGCAGTGCGGAACGTGCCACGCCCTTGCACGGATGTTCTGCGGCACACACACCCACACACCCCCACACCCCCACACACACCTGCAGCCACACAGGCAAGTATTGGTCGTCCAACTGATCAAGCTTGAACTTGATATAGCCGCCTGTGCATGTGCATGCGGGAGCAACAACAGAGAGCAGAACATTGGGTGCATGCTGTCGGAATACGGTAGTAGCGAGTGTGATTGGGTGTACAAAGAGCACCAGAAAGCACATGTGCATAGCGACAACACTGAAAGATGCAGCGCAGTGTTGTTTGCATGCAAGACCAGTCCGCACAAAACATCCCGTTCGTGTCAGCGTGAGTACCGCGCACCGTACGGCCAGGCGTTTGAGGTCATGTTTGTGTTGTGGCAGTGCCTGCGCGGTCAAAACACGTGGGGGCAGCTGGCTGGGTGGCAAGACCTCGG | |||||||||