| mature miRNA: ATGCCATGCCTGTCTAGCTAT species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|22064185|gb|BQ815666.1|BQ815666 1030052A11.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona ATGCCATGCCTGTCTAGCTAT EST sequence (targeted fragment marked with yellow): TCGGCACGAGGCCAGCGTATTTCACTGCTCTGCTCAAGCTCTACCCGCATTCCTTCCTTACTTGCTTCCCATTCTAGAACTAGTCTCAACATCTTCCTTCGTTCTTTGATAGCTGTACAGCCATGGCAGACCCTGTGGCCGACATCAACGTGGACTCTAGACAACTAGCGGAGCTCAATGAGCAGAAGGACGCGCTGTTGTCGAAGGTCGCAACACTAAAGAAGGAGCTGCAAGACTGGCGGATAAAGCTGGACACGCAAGTGAAGACCTATCGGACGGAAGTTGGCGACCTGCGCAAAACACTCAACACGGAGGTGGAGGGGTTGCGGTCAGAGTTCATGGAGCTGAAGACGGCGCTCAAGCAGCAGCTGGAGCTGACGGCAGGGCTAGCATCACAGGAGGTCAACGACGCAGAGGCCCGGCTGCAGCAGCTCCAACAGCAGCATTGAGTCCGGACGGCATGGAGGGGGACTGGTGCTGGATCCGGAGTGNGATCTAACAAGCCAGGCGAGGGCAGGCGGGGCCCACGCGCT | |||||||||
gi|14235613|gb|BG854429.1|BG854429 1024039H08.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN ATGCCATGCCTGTCTAGCTAT EST sequence (targeted fragment marked with yellow): GCACGAGGCTAAACTCTCGAAACCAGCGTATTTCACTGCTCTGCTCAAGCTCTACCCGCATTCCTTCCTTACTTGCTTCCCATTCTAGAACTAGTCTCAACATCTTCCTTCGTTCTTTGATAGCTGTACAGCCATGGCAGACCCTGTGGGCCGACATCAACGTGGACTCTAGACAACTAGCGGAGCTCAATGAGCAGAAGGACGCGCTGTTGTCGAAGGTCGCAACACTAAAGAAGGAGCTGCAAGACTGGCGGATAAAGCTGGACACGCAAGTGAAGACCTATCGGACGGAAGTTGGCGACCTGCGCAAAACACTCAACACGGAGGTGCAGGCGCTTCTTGCACTGCCTCGGGCCCGCCCCCGGGTGTTGGGCGGCCACGGGCGGGCGTCCTTCTGATTGGGGCCCCGTTGTTGGACTCGACACGTCTACGACGCCTGCGCGCCCGACTACGCGGCGGTGGTCCTCGGTATGACTTTGTCTTCTTTGATGACACGCCCGGGAGCTGGAACCGAACCGCCGCGGTAGCTAACTGTTAACGGGAGCGGAGTCTTCATAGTTCCCATTTCCTTCTCTTTGATGTCCACTTTTGTCTCCTATCCCCTCGCTGCATATCTCTAGACGGACACCAGGTCGCAGCCTACGACACACCCCTCAGGTATACCCCGCTTGTGGGGGACTCGCTCCGCCGAGGAGGGTCCCCGAACTACGT | |||||||||
gi|161824074|gb|FC107735.1|FC107735 CACW7098.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cDN ATGCCATGCCTGTCTAGCTAT EST sequence (targeted fragment marked with yellow): CTACGAGGCGGTGTGGGACTCGCCCTACACACTCAACCGCACAGACCTGCTGATGGGCTGGCCGCACGAGCAGGGCTGCCACAACCTGATCACGTTCCAGGGCCCCAAGCTGCTGGAGAAGCACGTGCGGCGCTGGCCTTTCATGGACTACAACACGCCGGGCGGCCGCGTGGCGAGACACGCCTGGGTCATCCGCGACCAGTGGTGGCCCATCCTGGCCGAGGACATGGTGACTGTGAGCGTGTGGCACTTCTTCCAGCGCCACTCAACCTCCGTGTTTGTGCCCATGCCGGCCTGGGCGCACAACCCATAGCTAGACAGGCATGGCATTGTGGAGACATCGCCTGGATCCCACCAGCAGGCCACGCAGCCAGGCGGGTGACCTTGTCACTTGGTAGGACGCCATACAGGTATAAGGCGTCTTATGCGCTAGGCAACGTAGGGAGTTCGGGACCCGTGTGGCTGTACGCCTGTACGTACAGGCACAGCGGTGCGAACCCCCCAGCAATCGGAGCTGCACAACAAGGCGCATGCAGGTTGCATGAAGAATACTGCATACAGCGTGCTTGGTGGTGCTGACAATAAGATAGACGTCTGTGCAGTGTTCAATGTTTCGAAGGTGCGTGAGCGACTACAGTAATCTTTGTGATAAGACGAAGAGCCTGACGTAACAAGGCAGGTATGTACATACACGTGTCACGGATGATGCGGGTTGTTCCCCGTGCTACGGCCATGGTAGTATAAAGCGGCGTATCAACGGTAAATTCACGAGGGAGGGGTAGGCCACAGGGGTAGGTTGCGACCTGCAATACGGTCCACGGGGCGCTAGTCGTGGGCGCTAGTGCATC | |||||||||
gi|15696784|gb|BI721089.1|BI721089 1031053H12.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei ATGCCATGCCTGTCTAGCTAT EST sequence (targeted fragment marked with yellow): CCATTGCTCAGAAGCTGAGCAAGGTGAAGGACGTGCAGATGACCAGCCGCATCAAGGAGGTGGAGCTGGCGGAGCTCAAGAAAATCCGCAAGGAGGTGGGCCGCCGCATCCGCGACTTTGAGAAGCTGTACGACCTGGTCAAGAACCAGCGCAACAAGTTCGTCAATCTCATCCAGGCCGCCAGCCAGAGCACCACGGAGATGAAGGACAAACTCAAGGTGCTTCAGAACGAGCTGGACATCCTGCAGAACGAGGTGGGCATCAAGGACAAGCTGCTGCAGCAGCAGCACACACAGCACGCTGCCAACATCGCGGAGCGAGACCAGCTGCGGGTGGAGCTGGGCAGGCTTGGCATGGTGTTCCGCGACAAGCAGGCGGTGGTGGACGAGCAGATCGTNATGGTGGACAAGCTCAACGCCATCATCAACGGCTGCGAGAAGGAGATGTTGCGCCTCAAGAAGCAGTACGAGCTGGTCATCGAGGCGNCCAACTACACCGGCATCATGCTGATTGACCGCAACGATGAGCTGTGTGTGCTGTACGAGAAGGCCAACATCCTGGACGAGGTCATCAAAAACGGNACNNTGGAGCTCAT | |||||||||