| mature miRNA: TCTTCTGCGAGCGGTGCGAGC species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161795334|gb|FC081416.1|FC081416 CACW12441.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD TCTTCTGCGAGCGGTGCGAGC EST sequence (targeted fragment marked with yellow): CCGGAACTTCAAGATGGCCGAGCCCACGGTTCTGTCGTTTGAGACTCATCCCGGCCGCACGCTAACGGCTGTACTGTTCAAGGATGTCAAAAATGCGAAGGAACTGCGGGCGCTGCTCGCAGAAGGCTCATTACCAGAGTTTGCATACATAAATGCCAGAGTGGTGCTGGACCCCTTCATCCTACAGCTGTCGGGGCACCGGGCGCTGGCGGCGGAGGGCAGCACGCGCATGGCCACAAGGAACATCCACACGGAGCTGGTGTACGGCGTCAGCGCCACAAAGCATGTTGCTGAGTCGTTGAAGCGGTTCGGCATCAATGATGACACGTCGGCTGTGCTGGTGGCCCGATTCGACTGCAAACCTGAGGAGCTGGAGGTGTTGGCCAAGCGGATAGAAGGCGAGCAGGCGGCCCTGTCGGAGCTGGGCACGGTGGTGGACCTGGACCTGATTGACAAGTACTTCAAGGTGTCCAAGCAGGAGCTGCAATCGCGGGGGCGTCTGGACGCCGTGACCTTCCGTGTCGGCGCAAAAGACTGCATGTGAGCTTGTAACGGTCGTGAACGATGGCCGGGCGTGCCGGTTTGCGGGCAGAAGGTGCGCTGGCACTGCTTTGGGGCGTCGGCACTGCAGAATAGGAGCACTGGCCTCCACAGGTGTAGGGATTGATGCTGTTGTGTACTGACGGGACGCGTTCATGCGCGAAGTGCCGTGATGCAATGGAAATGACAGCCGTTCTTTGAATTGACGAAATGGGTGATGGCTGTGGTACTAGGGCAGGGTGCGAAACACGTGTGCGCATGTGCGCGTGTGCTGGTGAGCACGTGCCCAATGCGATTATAGACTGCGACAACCGAAGCGGCA | |||||||||
gi|49464657|gb|BP092570.1|BP092570 BP092570 Chlamydomonas reinhardtii C9 various conditions Chlamydomonas reinhardtii cDNA clone TCTTCTGCGAGCGGTGCGAGC EST sequence (targeted fragment marked with yellow): ACTTATAATATATCACCGGAACTTCAAGATGGCCGAGCCCACGGTTCTGTCGTTTGAGACTCATCCCGGCCGCACGCTAACGGCTGCACTGTTCAAGGACGTCAAAAATGCAAAGGAACTGCGGGCGCTGCTCGCAGAAGGCTCATTACCAGAGTTTGCATATATAAACGCCAGAGTGGTGCTGGACCCCTTCATCCTACAGCTGTCGGGGCACCGGGCGCTGGCGGCGGAGGGCAGCACGCGCATGGCCACAAGGAACATCCACACGGAGCTGGTGTACGGCGTCAGCGCCACAAAGCATGTTGCTGAGTCGTTAAAGCGGTTCGGCATCAACGATGACACGTCGGCAGTGCTGGTGTGCCCTGATTCGACTGCAAACCTGAGGAGCTGGAGGCGGTGGCCAAGCGGATAGAAGGCGAGCAGGCGGCCCTGTCGGAGCT | |||||||||
gi|14242428|gb|BG861244.1|BG861244 1024076E05.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TCTTCTGCGAGCGGTGCGAGC EST sequence (targeted fragment marked with yellow): TTTTTTACCCAGGGAGTAACACCGGGACTAAACGGGGGTTCGTCCAAACGCGTAAAACCTTTCCTTCCCCGGCCGGTTCGCCAAGCACACGCGCCGAGCCGAGCCGTCGCCCTACGCCGAACTGGTTAAGGCAACCGCCGGCGCCCGCCGTACCCCGGGGGCCGCGCGCGCCGCNCGCCGAAGCCGCCAGCCGTTGGGAAGGGGGCCCACGATTGGGCAACCCCGCGCGCCGCCAGCGATTAGCCGCCGCCGTCGCCACCGACGCCCGGGGGCCGGCGCGCCAGCCAGGACAACACCACGACAACACCTCCGAAGGCGCCCCGGTTGAGGAACCAGTTGGGGCGAGCCACGCACCGTTGGGCCGCCCAAACCCACGCCCCCGACGGGGGAAGTTGCCACGTGGCATGCGGCCGTACCGTTTAACGGTCCGACTTTTGGAAGCGGGCGCGGGCACCGGGACCACCGAATTTTTTGGGCTCGCAGCGGGGGGGGTAAGCCACCAGAAGCGTCCTGTAGAACTGGAGGAGCGCGGCCTTGATCGGCTGTTTGCTCTGGTCGCCCACGAACTTCTGGTAAAAGGCAACCATGGCCCTTGGGAGAGGGCCTGGGCGCCAAAGCTGTAAATCTTGGAACACGTGGGCCGGCCGCCCCTTGACCCCCCAAGGGGGTTTGTCCACAGGTTTTTTTAATCTTTGGGGCGCGGGNCAAATAACACAGGGAGGGGCGCTGAAA | |||||||||