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mature miRNA: TGAGAAGATGCGGTCCGTTGGC
species: Chlamydomonas reinhardtii
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|15701577|gb|BI725882.1|BI725882 1031081G01.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei

TGAGAAGATGCGGTCCGTTGGC
| ||||||||||||||. |||
CCCCTTCTACGCCAGGCGCCCG

EST sequence (targeted fragment marked with yellow):
GCACGAGGCGGACCTCAAGGATAAGCCGCAGCTGGTGGCCTACAACAAGGTGGACATCCCCGACAGCGGCGACTTCTGGGAGATGGTGCGCGAGCAGCTCACGACGGAGCTGGGCGTGCCCGCGGACCGCATCTTCCCCATCAGCGCAGCCACCGGGCAGGGCGTCATCGAGCTGGTGCGTGCGGTGCGCGGCGTGTTGGACGAGCTGGGGCCGCAGCAGCTGACGTACGAGACCAACGCACTCAACCAGACGGCGGTGCAGCGGCGCGAGGTGCGCATCGACGACTTCACAGTGGCCATGGAGGACCTGCCGCCGGGCAGCGCCAGCACCGCGCCGCGTGTGTTCTACGTGGAGGGCGAGGGCATCGAGCGCTTCGCGCAGATGACCAACTGGGACTACTACGAGGCGGTGAAGCGCTTCCAACGCGTGCTGGAGGTGTCGGGCATCAACGGAGCGCTCAAAGCCCG