| mature miRNA: TGCTGGTCAAACCGGTGGTGG species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|8576541|gb|BE129178.1|BE129178 894021E05.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): TTTTTTGGACAACAGAACCTTTTACAGCCCCCCCCAAGGAACACAACAGCCCTTATATACATCAAAGCTGAACGCTTGCGTTGAGCTCTATAGATCTTAGGCACGGGTTAAGTTCCGGCGATCCTACCTCCTGCCTTAAGCCACCACCAATTTGGCCGGCACCTTTGGTCCTTAGCAGACTGCTCTCAGGTCCCGGACTTTGCATAGATATGGCAGTACAGCAGCACCATAGGACAAACGCACCCAACCGATATGGAACAGCTGCACCATCTGGGTACCATTCGGTCTCCAATCCAACCTGCACGACAAGTTGACCACTTCCCGCAATCTTGAACACGGGCACAATGGACAATACACAAGCTCCCTGTGGGGAGCCGAATCCCTGTTTGCGTGCCAGCCGCA | |||||||||
gi|22066441|gb|BQ816941.1|BQ816941 1030060G08.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): TCGGCACAGGCTCATAGGTAAATCACCTGAGGCAACACTAAAGCAGCAGTAGAGCAGAGACCTCGAGGTGCGGGAAAGTGCGCGGGGGAAGCTTTGCGGGATTGATTGAACACAAACAGCGCTTAAAGTATACAAGGCACAGCCTGGTTGTCTCCGGGCGCCACACTAAACAGCAGAGCCTGTTCCGCGCAGAGACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATGGCCAAGGCCTGGGCCGAGCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGCCAGCCCGTCGGCCGGTCGGTCTCCGCACGTTGGGGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGATTCAAGGAGTTGAGAGGAGGGAGGCATCTNCTGTGTCGGAGGCGCCGCTTCAT | |||||||||
gi|49467562|gb|BP095475.1|BP095475 BP095475 Chlamydomonas reinhardtii C9 various conditions Chlamydomonas reinhardtii cDNA clone TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): AAATAGCTTATCTCATAGGTAAATCACCTGAGGCAACACTAAAGCAGCAGTAGAGCAGAGACCTCGAGAGACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATGGCCAAGGCCTGGGCCGAGCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGCCAGCCCGTCGGCCGGTCGGTCTCCGCACGTNGGGGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTAGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGATCA | |||||||||
gi|15701138|gb|BI725443.1|BI725443 1031078C07.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): CTCCAACACACCCTTCCTCATCCTGCTGGCTGTGCCCACGCGCCCCGGCTGGAGCCGCCTCTACCACGGCCTACTCAACTCGGGCCGCAAGCCGACCTCGTTCTTCTTCAAGATTCTCTCCGCCATCAGGAAGATTCAGTGGGCAGACCATTCGTTCCTGCGCCACCCCATCCTGGACGGCGACACCTACATGCTGCACGTGCAGGAGCGGCTACTGCTGGGCAAGAACAACGACTGGAAGGGGTCATACTACATGCCCGCGCCCGCCGACGGAGCGGTGGTCGGCACCCGCCGCTGGTTTGACGAGCACGGTGGTGTTGTGCCGACATGCGAGGCAGGGGTAGCCATGCCGCCGCAGCTGAGCAAGCGGGATGCTATCGAGCGCTACCACCAGCACACCAAGCACTGCAAGGTCTGCAGCCAGGCCCTTCGTAACGTGGAAACTGCCACGTGGCTGGCAGCTGCCGGCGGCGTGCTGGCGGCGCTGGTGCTGGTGGCGCGCGCGGTGGCGGGCCTGCCGCTGCTGGCGCCCGATTCGGTTG | |||||||||
gi|14230670|gb|BG849486.1|BG849486 1024025E07.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): GAAGTTTTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGCCAGCCCGTCGGCCGGTCGGTCTCCGCACGTTTGGGGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGCCCGGTCCGCCGCCCTCACCGGTTTCACCAGCAAGACCTCGTACCTCAAGTCCCGGATGGAGCAGCTGCAGGAGCCGCTGCAGTACGAGTGCCAGAGACCCATCAACTGTTTCCCTGACCTGTTCATTTTCCGTCCCCTCCCCGCACGTCTTTCTGTTGCATTAATCTCTGCATTCATGATTTTTACACAAAACTGATCGTATAGACCGCGGCACTTCCTCATATTATTTTCTTTACGACTTTCCACTCAGTCTTGACTGCGTCGTCACGTGCTTGTGTTTTACTCTCCTACCTCTCCCTCATTGTCTGCTTCTGCTCTTCCACACTGTCTGTTTCTTTGTACCTTTCCAGTTTTCACTTTTCGTTGACACAATTCGTACCTGTCAAA | |||||||||
gi|14229169|gb|BG847985.1|BG847985 1024020A02.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): TGAAAATAGCTTATCTCATAGGTAAATCACCTGAGGCAACACTAAAGCAGCAGTAGAGCAGAGACCTCGAGGTGCGGGAAAGTGCGCGGGGGAAGCTTTGCGGTATTGATTGAACACAAACAGCGCTTAAAGTATACAAGGCACAGCCTGGTTGATCTACGGGCGCCACACTAAACAGCAGAGCCTGTTCCGCGCAGAGACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGTCCAGATGGCCAAGGCCTGGGCCGAGCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGACGGCCAGCCCGTCGGCCGGTCGGTCTCCGCACGTTGTGGCGCACTACTTCACGGACTCGGCGGATGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGCCCGGTCCGGCGCCCCCACCGGTTTCACCAGCAAGACCTCGTACCTCAAGTCCCGGATGGAGCAACTGAAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGATCAAGGCAGTTGAGAGGAGGGAGGCATTTCCTGTGTCGGATGCGCCGCTTTATAACGAAGCAGGGCTGCAGGGCTGCG | |||||||||
gi|9440823|gb|BE441322.1|BE441322 925004D05.x1 C. reinhardtii CC-2290, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): TTTTTTACAACAGATTCTTTACAGCCCCCCCAAAGGAACACAACGGCCCCTATACATCAAAGCTGGACGCTTGCGTTGAGCTCTATAGATCTTAGGCACGGGTTAAGTTCCGGCGATCCTACCTCCCGCCTGAAGCCACCACCAATTTGGCCGGCACCTTTGGTCCTTAGCAGACTGCCCTCAGGTCCCGGACTTTGGATAGATGTGGCAGTACAGCAGCACCATAGGACAAACGCACCCAACCGATATGGAACAGCTGCACCATCTGGGTACCATTCGGTCTCCAATCCAACCTGCATGACAAGTCGACCACCTCCCGCAATCTTAAACACGGGCACATGCGCACCAATGGACAACACACAAGCTCCCTGGGGTTAGCCGAATCCCTGTTTGCGCGCCAGCCGCATCTGTGTGACTACAGTCGTCAGCTTGTGCCGCCTGCACATGAGCAAATCGAATCTTGAAGTCAGCATCACGCCATCCCAGCATACGGTACACATTGGTTCCCGTCAACGGTATCGCAGC | |||||||||
gi|7615394|gb|AW720838.1|AW720838 833009E02.x1 C. reinhardtii CC-125 -S, Lambda Zap II Chlamydomonas reinhardtii cDNA similar to TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): GGCCGGAGAAGATTCAGTTCGCTATCGGCCTGCTGCCGGCCATCATCTTCGGCCAGAAGTACGTGGAGGAGCAGGACCACCTGAGCGTCACACAGTGGATGCGCCAGCAGGGCGTGCCCGACCGCGTGAACGAGGAGGTCTTCATTGCCATGGCCAAGGCCCTGGCCTTCATCGACCCCGACCGCCTGTCCATGACCGTGGTCCTGACCGCGCTCAACCGCTTCCTGCAGGAGCGCCACGGCTCCAAGATGGCCTTCCTGGATGGCGCGCCCCCGGAGCGCCTGTGCCAGCCCATGGTGGACCACTTCACGGCCCGCGGCGGCGAGCTGAAGATGAACGCGCGCGTGAAGGACATTGTGCTGAACGACGACGGCAGCGTCAAGCACTACAAGCTGACCACCGGGGAGGTGGTGGAGGGCGACCTGTACATGAGCGCCATGCCGGTGGACATCCTGAAGCTGCTGGTGCCGGACCAGTGGAAGCCCAACCCCTACTTCTCCCAGCTGAAGGAGCTGGAGGGCGTGCCCGTCATCAACATCCACATCTGGTTTGACCCGCAGCTGACCACCGTGGACCACCTGCTGTTCAGCCGCTCGCCGCTGCTGTCGGT | |||||||||
gi|14235489|gb|BG854305.1|BG854305 1024039E11.y2 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): GAAAATAGCTTATCTCATAGGTAAATCACCTGAGGCATCACTAAAGCAGCAGTAGAGCAGAGACCTCGAGAGACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGGCCAGATGGCCAAGGCCTGGGCCGAGCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGCCAGCCCGTCGGCCGGTCGGTCTCCGCACGTTGGGGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGCCCGGTCCGCCGTCCCCACCGGTTTCACCAGCAAGACCTCGTACCTCAAGTCCCGGATGGAGCAGTTGGAGGTGGCGCTGCACGAGGAGCGCGAGAGCCGCAAGAAGGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGATCAGGGGGGGGGTGAATGAGGATTAGGGGAGNTTGANNANCANAGGCGCCCCTTCATAGCGAAGCAGGGCTGCAGGGCTGCGTGGCGGCCACGGGGCCGGCAGGGCAGACGGTGCCGCGCCTTGGCAGGACGGGGGCCGCCTGGTTTGCGGGGGAGTAGCATGCACCGCGATGGCAGCGGCAGCACCGGAGGAGAGCCATGA | |||||||||
gi|23366137|gb|BU653957.1|BU653957 1112110C04.y1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): GCACGAGGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGCCCGGTCCGACGTCCCCACCGGTTTCACCAGCAAGACCTCGTACCTCAAGTCCCGGATGGAGCAGCTGGAGG | |||||||||
gi|161810612|gb|FC095023.1|FC095023 CACW24257.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): ACAGCTCATCTCATAGGTAAATCACCTGAGGCAACACTAGAGCAGCAGTAGAGCAGAGACCTCGAGAGACTATCCAAACTCGCAATCATGGCCTATAACCTGTATCAAGTCCAGATGGCTAAGGCCTGGGCCGAGCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGGCAGCCCGTCGGCCGGTCGGTCTCCGCACGTTGGGGCGCACTACTTCACGGACTCGGCGGAGGTGCGTTCGCAAGCCGGCTCCGTTGGGCCCGCCCGGTCCGCCGCTCCCACCGGTTTCACCAGCAAGACCTCGTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGGTGGAGGCTGACCTGAACCACCTCCGCAACAGCCTAAAGCGCTGAATGAGGATTCAAGGAGTTGAGAGGAGGGAGGCATCTTCTGTGTCAGAGGCGCCGCCTCACCGCGCAGCAGGGCTGCAGGGCTGCGTGGCTGCGTGGCGGCCACGCCACCGGCAGGGCAAACGGTGCCGCAGGTTGGCAGGACGGGGGCCGGCTGCTTTGCGGCGGCAGTAGCAGCAACCGCGATGGCAGCAGCAGCAACAGCAGCAGCAGCCATGGCCTCCCATGTGGGCGCGTGGGGCGGGGTGAGGTGCGCCGCGCTACTCGTGGGCACTTGGCTTGGCGCGATGTGTCGGGCTCGTGGCCCGGGCCTTACGCGGCCCTTCAGCGGCCTGTGGACTGTGTCGGCGTGTAGACGTATCGGCGTAGTTGTGGTCGTAGTCCTGCTCGGCAAGCG | |||||||||
gi|15372069|gb|BI531495.1|BI531495 1024114B08.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TGCTGGTCAAACCGGTGGTGG EST sequence (targeted fragment marked with yellow): ACGGCACGAGGCTGGGCCGAGCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTTTTGGCACAGTCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGCCAGCCCGTCGGCCGGTCGGTCTCCGCACGTTGGGGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGGTTCCGTTGGGCCCGACCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTTGTACCTCAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAAGGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGATTCAAGGAGTTGAGAGGAGGGAGG | |||||||||