mature miRNA: TTGACAGAAGAGAGGGAGCA species: Cichorium endivia database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|125348866|gb|EL363378.1|EL363378 CCEM7861.b1_J21.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM7861, mRNA sequence TTGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): GTACAAAGTTTTCTCCGGAGAAAGTTGAGCATGACAAAGAAAGATTTCGTGAATGATCCTTATGGTCATGTGTTGATGGGCGGCAATGGCGGTGAAGATGGCGGTGATGGTGGTGGTGGCGGTTCTTCGAACATGGAGTTGAAGAAGAAGAAAGTGGCTCAAAATGGTGGTGGTTCGAATAGTGCCACGAGGTGTTGTCAAGCTGAAAAATGTTCAAGTGATTTAGGTGAAGCAAAACAGTATCATCGAAGGCATAGAGTATGTGAGTTTCATGCAAAAGCTCAAGCCGCCATTGTTGGTGGTATACACCAAAGATTCTGTCAGCAATGTAGCCGGTTTCACGAGCTTTCAGAATTCGATGAAGCAAAGAGAAGTTGTAGAAGGCGTTTAGCGGGCCACAACGAAAGACGAAGGAAGAATTCAATGGAGTTCAAAGGCAACGGGAAAGAACTTGTTTGTGTTCAAAGTGATGATAGGAGGTTTCAAATGGTTATTCAAGAAAACCAAACTTATAAACATTTGCAAACCAGATGAAAATCTTAAATAAATCGAGGCAAATAGTAGTAATATGTATGTATGCATGCTCTCTCTCTTCTGTCACTTTCCTAGTACTTAGAGAACTGTTTGTTTTTAATAACCGTGTGTCGAATACTGTTGTCGAATGTTGAAAACTGATTATTATTAACCAATGTTGCATTTGTATGTTCCTAATATAATTGTTGTAATAATAACGTTTTGTTGGATCCAAAAAAAAAAAAAAAAAAAGGCCGCCTCGGCCCAGTCGAC | |||||||||
gi|125334365|gb|EL348959.1|EL348959 CCEL5388.b1_G03.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL5388, mRNA sequence TTGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): AAAGATTCGTAACCCATACGATTCCCTTTCGACACTCTCTTTGCCGCTTCCAGCTTCGGCTGACTTCATTTATCATCTTCAGGGAATTTTATAATGACAGAGCCTTCTAAAGTCATTCACGTTCGGAATGTTGGTCATGAGATTTCGGAGCCTGATCTGCTTCAGCTATTCCAACCATTTGGAGTCATCAACAAACTAGTTATGCTTCGTGCAAAAAACCAGGCTCTCCTTCAAATGCAAGATGTTCCTTCAGCTGTCAATGCAATGCAATTCTATGCCAATGTTCAACCAAGCATAAGGGGAAGAAATGTTTATGTTCAGTTTTCATCTCACCAAGAGCTAACCACCATGGAGCAAAATACTCAAGGACGTGGAGACGAGGAGGTTGACATATTTAAAATTCTCTTTTCTCTTTCTCTTTCTTCTTTTCTCTATCTATTCTTCTCTATTCATTCTATTCTCTTCTCTCTCTTCTGTCTATTATGCTGGGCTGCAATCGGATGCTTTGCGGAACACAGCCTAACCGTATACTCCCGGTTACAATTCATCACATGCTTTACCCCATCACCGTTGAAGTCCTGCATCAAGTTTTCTCTCCTCATGGTTATGTGGAGAAAATTGTCACTTTTCAAAAGTCAGCTGGTTTTCAAGCACTTATTCAGTTTCAATCGCGCCAGAGTGCTGTGTCTGCCAGAAATTCCCTTCAGGGGCGGAATATTTATGACGGTTGCTGTCAACTAGATATTCAGTTCTCNAATCTTGAAGAGTTTGCAGTGAAACTACATAATGAGCGGTCTAGGGATTTTACAAACC | |||||||||
gi|125337183|gb|EL351777.1|EL351777 CCEL8400.b1_P12.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL8400, mRNA sequence TTGACAGAAGAGAGGGAGCA EST sequence (targeted fragment marked with yellow): GGGTGGTATTGTTTGAAGAACAGATACAAAGGAGCATGGTGGGAATAGAAAGGAATTCGAGAAGACTGATTACTCAATAAGTAAACATCCAGAGTTTCGCTACAAAACCGAGTTTCAGAGCCATGAACCTGAGTTTGACTATTTAAAGAGTTTGGAAATTGAGGAGAAAATCAACAAAATTAAATGGTGCCAAACAGCTAATGGTGCCCTCTTTCTTCTGTCTACTAACGATAAAACCATTAAATTCTGGAAGGTAACTATTCTAATTTTGCTTTCTTTTACTTGCATTTCTTATAACATGTTCATATGTGTTTTGACATTTTCTTATTAAAATTTTTACACCCTTTTAAAAGAATATAAGAATCTCTTCATATACATGCAACCTGTTATGGACTTTTGGTAAAGTTCTCAATTTATTATATCTGATAATGTTCAATTTTTTGGATAACATATCATATGTGAATTTAATGTTATTCAGGTCCAAGAAAAGAAAGTGAAGAAAATTGCAAACATGAACATGGACCTTTCCAAAATTGTTGGAAAGACAAATGTTGCTAGTTCAAGCATTTCTTCAAATACTAATTCACATATTGCAAATGGAGGATCTAAAGATAATAATAAATCTTCTACTAATTTAATCAATGACTTCAAATTCCCTCCAGGAGGCATCCCTTCACTCCGTCTACCTGTGGTAGCTTTACTCTTACTTTTTTTCTTTATCATTTACAACCCTTC | |||||||||
gi|125339107|gb|EL353701.1|EL353701 CCEM10343.b1_N18.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM10343, mRNA sequence TTGACAGAAGAGAGGGAGCA |