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mature miRNA: TTGACAGAAGAGAGGGAGCAT
species: Cichorium endivia
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|125339107|gb|EL353701.1|EL353701 CCEM10343.b1_N18.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM10343, mRNA sequence 

TTGACAGAAGAGAGGGAGCAT
  ||||||||||||.|||||.
CTGTCTTCTCTCTCTCGTG

EST sequence (targeted fragment marked with yellow):
GGCCCCCAGGGTATCTGAAGCTACAGGGATTATCCACGCGAGAGATCATTGGGTTGCGTGTTCAAAGCATCATCCTCGTGGCACTTCAGTTAACTGGAGAGAGACGAGTTTGATTCTTTGATCACTGCATCCAATCCGAGTTCCGTGGGTTTCCCCGTGGGCTTCAAAACACTGGAGGAACACGCCCGCTATCCCAGGGCGCCCCCCCCGCGTCCTTCTGGATTATCGAGGAAACCACCACAGGCGCCTGGTAAGAGGCGACCCTTGTCATGTTTAGTGGATGGATGTACAGCGGACCTGAGTAGTTGCAGAGACTATCACCGGCGGCATAGAGTTTGTGAAGCTCATTCCAAGACACCGATTGTTGACATACGTGGCAAAGACCAAAGGTTTTGCCAACAATGCAGTAGATTCCATTCAGTTGGGGAGTTTGACGAAGTAAAGCGGAGTTGCCGGAAGCGGCTTGATGGGCACAACAGACGTAGGAGAAAACCAAGGGGAACAGAATCGACTATGTACTTGAACAATTATGAGAGCTTCTTCACCAATCATCAAGGAAAAATTGTTGCGGCTTGGTGGTTCGCCAGCGTACACCGGTGGTCCGCTGAGGTGGCCCAATAGAGAAAAGGCATCATCATCGAGAGAGAAAAAGTTTCCCTTCCTATTGGGGGCCTACTCTGATGAACCCTCGTTCCTAAACAACACACATGCGTCGTCACATCAGGAAAGATCGACACAAATAGTTGAACCCAAGGCTAACGGCGGTGCTCTCTCTCTTCTGTC


gi|125344980|gb|EL359574.1|EL359574 CCEM4360.b1_P09.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM4360, mRNA sequence 

TTGACAGAAGAGAGGGAGCAT
 |||||||||||||.|||||.
TACTGTCTTCTCTCTCTCGTG

EST sequence (targeted fragment marked with yellow):
ATGATTTTACGGATCTACACGTCTCTTTCGTCTTTTCAGATCCCTGACGACCTTCGGAGTCTATATCATCGGAAATACATGACCAATAAGCGGGGGCAGATGAATCTTGATGATCGGACAGCTCATGATCTTCAGTCAGTCGGCTGCGTTACAGATGAACGAATCCATTCAAAATCTCTTTGTCCCTGGAACTTCAAAGGGAACCCTAGATTTGATGAATACATTGGGGCTTCGGATTCGGTGTCTACCGGGCTATCAAGAATAGCTTCGAGTTCTGGGAGTGCTCTCTCTCTTCTGTCATCTCAATCTCAGTGTACTTCGTGTCATTCCTCGAGAATTCAAACATCAAACTTGCAATCACACGTCCCGACGTGGTTTCAGGGCAGCCATTGTGGACCAAATCAAGACTCTCCACCGTTGAATCAGCATGATGTGGACTCCATGGCTGGGTTTGAGGGTAGTTCGTTCCAGTTTGCCATTGATGGGATGTTCAAAGGGTCAAAATGCATGAACTCTGACGACCTAGTTTTTGCAGATGAAGGGTGTACTATTGATTTGCTACAGTTATCATCACGTCTTGAGAGAGTTGAGCATCAAAAGCGAAGCTCGCAAATGAACCGTGCATTTGCAAATGGTGTTTCTGATGGTCTTGGTATTTCGTAAGGACAAACAAGAGTCACAAGATATTAGGAGCAGCAACCACTGGGAGTCTTTGGCAGACGGTTTTCTACAAGCATCTCAATGCCACTAAAAGAG


gi|125337183|gb|EL351777.1|EL351777 CCEL8400.b1_P12.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEL8400, mRNA sequence 

TTGACAGAAGAGAGGGAGCAT
| |||||||||.||.| |||.
ATCTGTCTTCTTTCTCCCGTG

EST sequence (targeted fragment marked with yellow):
GGGTGGTATTGTTTGAAGAACAGATACAAAGGAGCATGGTGGGAATAGAAAGGAATTCGAGAAGACTGATTACTCAATAAGTAAACATCCAGAGTTTCGCTACAAAACCGAGTTTCAGAGCCATGAACCTGAGTTTGACTATTTAAAGAGTTTGGAAATTGAGGAGAAAATCAACAAAATTAAATGGTGCCAAACAGCTAATGGTGCCCTCTTTCTTCTGTCTACTAACGATAAAACCATTAAATTCTGGAAGGTAACTATTCTAATTTTGCTTTCTTTTACTTGCATTTCTTATAACATGTTCATATGTGTTTTGACATTTTCTTATTAAAATTTTTACACCCTTTTAAAAGAATATAAGAATCTCTTCATATACATGCAACCTGTTATGGACTTTTGGTAAAGTTCTCAATTTATTATATCTGATAATGTTCAATTTTTTGGATAACATATCATATGTGAATTTAATGTTATTCAGGTCCAAGAAAAGAAAGTGAAGAAAATTGCAAACATGAACATGGACCTTTCCAAAATTGTTGGAAAGACAAATGTTGCTAGTTCAAGCATTTCTTCAAATACTAATTCACATATTGCAAATGGAGGATCTAAAGATAATAATAAATCTTCTACTAATTTAATCAATGACTTCAAATTCCCTCCAGGAGGCATCCCTTCACTCCGTCTACCTGTGGTAGCTTTACTCTTACTTTTTTTCTTTATCATTTACAACCCTTC


gi|125348866|gb|EL363378.1|EL363378 CCEM7861.b1_J21.ab1 CCE(LMS) endive Cichorium endivia cDNA clone CCEM7861, mRNA sequence 

TTGACAGAAGAGAGGGAGCAT
 |||||||||||||.||||||
CACTGTCTTCTCTCTCTCGTA

EST sequence (targeted fragment marked with yellow):
GTACAAAGTTTTCTCCGGAGAAAGTTGAGCATGACAAAGAAAGATTTCGTGAATGATCCTTATGGTCATGTGTTGATGGGCGGCAATGGCGGTGAAGATGGCGGTGATGGTGGTGGTGGCGGTTCTTCGAACATGGAGTTGAAGAAGAAGAAAGTGGCTCAAAATGGTGGTGGTTCGAATAGTGCCACGAGGTGTTGTCAAGCTGAAAAATGTTCAAGTGATTTAGGTGAAGCAAAACAGTATCATCGAAGGCATAGAGTATGTGAGTTTCATGCAAAAGCTCAAGCCGCCATTGTTGGTGGTATACACCAAAGATTCTGTCAGCAATGTAGCCGGTTTCACGAGCTTTCAGAATTCGATGAAGCAAAGAGAAGTTGTAGAAGGCGTTTAGCGGGCCACAACGAAAGACGAAGGAAGAATTCAATGGAGTTCAAAGGCAACGGGAAAGAACTTGTTTGTGTTCAAAGTGATGATAGGAGGTTTCAAATGGTTATTCAAGAAAACCAAACTTATAAACATTTGCAAACCAGATGAAAATCTTAAATAAATCGAGGCAAATAGTAGTAATATGTATGTATGCATGCTCTCTCTCTTCTGTCACTTTCCTAGTACTTAGAGAACTGTTTGTTTTTAATAACCGTGTGTCGAATACTGTTGTCGAATGTTGAAAACTGATTATTATTAACCAATGTTGCATTTGTATGTTCCTAATATAATTGTTGTAATAATAACGTTTTGTTGGATCCAAAAAAAAAAAAAAAAAAAGGCCGCCTCGGCCCAGTCGAC