| mature miRNA: GTATAGCATCATGAGCAATCA species: Citrus aurantium database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188423143|gb|EY847872.1|EY847872 CA26-C1-002-070-A11-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTAAAACTGCATAATGCATATACATTAAATAAGCAATTAATTAATGTTGTAGCTGCAGCTAGCTGGCTGGTTAAATTAAGGAGAGAAAACAAATTAAATAAAGCTTAATTGTAAACTAAAGAGTTTTATGGACCTCTAAGTCCCAGCTAGAGAGCACACTTATAACTTAAGCAAACACAAAGAAAAGATTTTGTATAGCATCATGAGCAATCAGCCTTATATTTTTAGCAAAGTGACTGCTCATGATGTTATATCGATTCATCTTCTCAATGCCTATATAAGTGGGCTGCCGTTAATAACTCTATTCATCCGTCTACCGGAGACCTCCCCCGCCGAGAGCCGGTGCCCAATAATCTGCCCCGTTGTCGCTCCCAACTTGCAGCGTGCATGATACTGGAACCAGACACAGCCCTCTGCTCCTTAAGCTTTTCTTTACTTCTTCTTGGGATTCCTGATGATCACAAGTTCCTTTCCTCTTCATGCAGTTGCCATTCCACAGCTGACCAGGGTCTTCCGGAAATATACAATTCCTCTCCCCTTGAACGGGGGGCTGGGAAGTTTGTTGTTGCCTCTTAGCTGGTGATCCCCCACTGCCCCAGTACGGGAAGTTGGAGGGCCCCAATTTTACTCCGGCAGAAATTTAATGGTACCCAATTGGCTTTAAAAAAAAAATGAAAGTGGGGGTCGTCTTTTTCCAAATTGAAAAAAAAATCTGGAGGAAAAACGG | |||||||||
gi|63070689|gb|CX301835.1|CX301835 C08014B07SK PhyRootSr1 Citrus aurantium cDNA clone C08014B07, mRNA sequence GTATAGCATCATGAGCAATCA EST sequence (targeted fragment marked with yellow): GAATTCGGCACGAGGGGTACATTAGATTCCTGCAGAGTCAAATTGAGGCCCTCAGCTTGCCGTACTTGGGCAGTAGTGGATCAGCAGCTATGAGGCAACAACAAAACTCCCAGCACCCTGTTCAAGGTGAGAGGAATTGTATATTTCCTGAAGACCCTGGTCAGCTGTTGAATGACAACTGCATGAAGAGGAAAGGAACTTGTGATCATCAGGAATCACAAGAAGAAGTAAAGAAAAGCTTAAGGAGCAGAGGGCTGTGTCTGGTTCCAGTATCATGCACGCTGCAAGTTGGGAGCGACAACGGGGCAGATTATTGGGCACCGGCTCTCGGCGGGGGAGGTCTCCGGTAGACGGATGAATAGAGTTATTAACGGCAGCACACTTATATAGGCATTGAGAAGATGAATCGATATAACATCATGAGCAGTCACTCTGCTAAAAATATAAGGCTGATTGCTCATGATGCTATACAAAATCTTTTCTTTGTGTTTGCTTAAGTTATAAGTGTGCTCTCTAGCTGGGACTTAGAGGTCCATAAAACTCTCTAGTTTACAATTAAGCTTTATTTAATTTGTCTTCTCTCCTTAATTTAACCAGCCAGCTAGCTGCAGCTACAACATTAATTAATTGCTTATTTAATGTATATGCATTATGCAGTTCTA | |||||||||