| mature miRNA: TGACAGAAGAGAGAGAGTACA species: Citrus aurantium database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188270492|gb|EY846106.1|EY846106 CA26-C1-002-054-A10-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence TGACAGAAGAGAGAGAGTACA EST sequence (targeted fragment marked with yellow): CTTTCAGCCAATTATTCACCTTCTTGCATTTCGAAATCATCAAATAAACAACTCAACTTCTTGCCCTCAAAAACGAACCTATGTCTTCAGAAAAGAATCTCACTGTCACTGTCTGTGCATCTTTCATCGTCATCAGACGGTGCCCGTTTGGTCGTGGAGGATGATCTCCATGCTTTCTTGCAAATTCTTCCAAGTGATTTGCGTGATAGACTTCAAAATGATTCCAAGAGGGGACAACTCTTAGAGGTAATACTGGACCTAGGTCGGCTACCAGAAGCACGCTATCTAGGTGAATTTGGCGGGAAGTACTTAAGGAGTACTGAGGTAAATTCATGATTTTGGGACATCTTCAAGTCTCTAGTTGCTTCTAATAGTGAAATGCATATTTATTTATCTATTTATTCTATCTCTTCTGACAATGCCATTTGCTTCGTTGGATTAACTTATGACTGATGGTTCTGGATACCTTGTAAAGTTTTTATTACAAAAAGAAAGGGATGTATTTGTTAAAAGAAGGGAGAAACTCTTAATTTGGTTTTAGTTACATATATTATATGCTTTTATTAAGCTAAGGTATCGGTGGAAAAATTGGAGTATTGCTCCAAGGGCTGTTGGGGAATTTGGGAGGGGAAACAGAGCTTGGCTTTAAGGGAACCCCTGGCCCGGAATTTCTTGCTTTTTTAGAAAAAGGAAAGGGGCAATTGGTTGCTTTACTTTTCCTGGGTTGGGCCGGGCCTCCAAGCGGCCTTTTTGGAAAGGGCTTATTGTTTTTATCTTCTTTTGGGTAAAA | |||||||||
gi|63070583|gb|CX301729.1|CX301729 C08012H10SK PhyRootSr1 Citrus aurantium cDNA clone C08012H10, mRNA sequence TGACAGAAGAGAGAGAGTACA EST sequence (targeted fragment marked with yellow): GGCAAGGACAAGGACAAGGACAAGGACAAGGGGAAAAAAGCCGCGGAGGGAGACAGAAGGAGAGAGAGAGACGATCGCGATCATGAAGAGGATGATGAGAAATGCGATCGCGCTTGCTCTTTCGATTGCTCCATAGACATGGGGGATTTGTTCTCTCTCCCAAAAGTGTCTGTCTCTCTCTCTTCTTTCGCCGCTTTCCCGAGCCCAAGGGTGTGCGGCGCTCTGCTATCCGCTCTCTCTCTCTCTCAAGAGGGTCAAACTCTCTCTTCTTCTGGCGAGAGTCCTCTCTCTCAAGCTCAGGCTGAGGCTCCTCTCTTTTTTTTGAAGAAAAAAAGTATTTATTATTCATAGACATGCAACATTGATGCAACTTTTATTATTACAACTTAATTTATTCATTTATTAAAGCATGCGCACAGCCTTAAAAGAAAACAAACTTTATTTTTAATTGGAAGCATTTGCGGAGCTCTCAGCAGTTCGATCTTCAAACCTTTTTAAACACAACTTTGAACGGAACATCACTCAAAGCCAGACGCCGCACCCCACCATTAATAAAAATGCCAACATCTCTGCACAAACCTCTGCAGAAATTACAAACCGACGGACAGTAGACAAGCTTGTAATCACCAAAAAACTTCTCAATCTTAAACCAATTTCTCATGGTTCTGGGGCCGGGATTGCCTTCAACTCCCCAGTTGTCACAAGCCACTGCCCAATGCCGCATCAAATTGTCAAGCTTCACACTGTGGAC | |||||||||
gi|188289827|gb|EY849969.1|EY849969 CA26-C1-002-093-H03-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence TGACAGAAGAGAGAGAGTACA EST sequence (targeted fragment marked with yellow): CAACAGATGACTTTAGTTTGGAATAGTGTCCCATTTGTACACAAAAATCCTACTGAAACTTTCACTTGGGAAGGAACTTGTGTCTCCAAGTCCACTCAAACAAAAGGATATGCATCAAAGTCAGCCAAAGGGGAAGGCACTGATGTGCTTCTGCAATTACATGGCAATCAGCCGCCAAACTCAGTCCCTGCACGTCGTGATGATTCCAATGGGCTCTTGCTATCCAAGGCCAAGGTTACTATGGCTGAGGTTCTTGACCAAGGTCCTGAAGAATCCATGATTTCTTTCGATCTGGGTGCGACACAAGATTGTCATAGTGCTCTCTCTCTTCTGTCAAAAACTTCTTGGGGGATATGTGAGCCAAAAAAGGTTTCGCAGCAGCACCCCACGAGTACAAGTCTTACCAACATACCTCACGCTGTCATGCCTGCAATGGCCCAAGGTTCTCCATTTGCTTCATCAGAATACAGGCAAATTGGAAAAACTGTCCACTGAATTCCAAGTGCATGCCTCATCTTTTCACCAAGATGAAGGAAAATTATATTCAAGAGATCCAGCTGTACAGGGCACCATATGAAAGCGACTTTTTATCCCACTGGGGACTGACTGGGTATGGCCAATCAATCACTTTTATCCTAAAAATTTTACCCTGCTGAGGAAAGTTTTCTTACTGCCCCATTTCCTGAAACCACAAGTCCCCCAAAAATCAGGGAATCTCCCCTCAAATTTTTCGACCTGTTTTTTTTTGTAAAAAGGATTTTATTACCCTTATTATCTCCCCCGGACTTAACTTATTTCTTAAAAGGGACCGGGCACTAAAAAAAAAAGGGTTGAAGGGAATTTTTGACATTTATTTATATTATAGCCAAAAAAGAACTT | |||||||||
gi|188261733|gb|EY846760.1|EY846760 CA26-C1-002-053-G03-CT.F Sour orange leaf, field plant Citrus aurantium cDNA, mRNA sequence TGACAGAAGAGAGAGAGTACA EST sequence (targeted fragment marked with yellow): CTAAGACCCCTCAACACCAGGGCCAAAACCTCCCTCCCCAAGCTCGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGCATTAAAGCTGAGCTGAACACACCACTTGTCATCAGCCTCAGCACTGGCCTCTCCTTGTTCTTGGGCAGGTTCGTCTTCTTCAACTTCCAAAGAGAGAACGTGGCCAAACAAGGCTTGCCCGAGCAGAATGGAGTCACCCACTTTGAAGCCGGTGATGTTCGTGCCAAGGAATATGTTAGCCTCCTCAAATCCAACGACCCAGTTGGCTTTAACATTGTTGATGTTCTCGCTTGGGGTTCCATTGGCCATATTGTCGCTTACTACATCTTGGCCACCTCCAGCAACGGCTATGATCCCAAGTTCTTTGGTTGATTTTGTTATTTGTACTGTCTCTCTTTTGTCTCTTTTAGTTTCTTCATTTCTCAAGTGTTGCGCTTTGTATAGTTAATAAATTTCCTAGCATTTAATGGATGAGACCGATGATGTAATCTATGCATTTTTCACATTTTTAACGTGCATGTATTTTTCTCTTTGTTCCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCG | |||||||||