| mature miRNA: AAGAAAGCTGTGGGAGAACAT species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110869236|gb|DY288652.1|DY288652 IC0AAA70AH08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence AAGAAAGCTGTGGGAGAACAT EST sequence (targeted fragment marked with yellow): CAGACAAAAACAAAATAAAAAAGGACATACATAAAGTAGAAAAATTCTCTTGCTCTCTCTCTCTCCTGCCCTGTACTGTGCTGTTCCCTCTTCCACAGATTCTTCACCTCTTGATTAGGGTTGTTTCACCCTTGCTTGCTCCTTCACCTGGGATTGGCAGGATTTGTTTGGGCTTCTGATGTCAATTTTTTTTTGGTAATGTCTTTGCAATCATCCTCCACCCCGCCCATCCACATCCTTCATATCTCTCTCTCACACACACAGATTTTGGTTATTGCCTGAAACATGAAGGAAATCTTGTGCATATTGCAAGAATGAAATCTGAGTCCCCTTTTGTACTGTGAAAAGCAGGATATTTTCCATGAAAATTAACATTTAATTATGCTTATTTGACTCGGCGTTGTACATTTAGTTGAGTAGCATATCTGTTATTAGCAAATTCAGCTTTTTGTGCATCACAAATGGATGACGGTGGGCATCGTGAAAATGGAAGACACAAAGCAGATCAGTATAAAGCAGCTCAGGGACAGTGGCTCATGCATCACCAACCATCAATGAAACAGATAATGACCATTATGGCTGAGAGAGATGCAGCTTTACAAGAAAGAAATTTGGCTATTTCTGAGAAAAAGGCAGCTATTGCAGAGCGAGACATGGCATTCTTACAGCGAGACACAGCCATTGCAGAGCGAAACAATGCTATTTTGGAACGAGACAATGCCATTGCTAGTCTTCAGTATCGAGAAAACTCCTTGGGTGGTAATATGTCATCATGTCCGCCAGGATGCCAAATATCACGTGGTGTGAAGCACATGCACCATCCACAGCAGCATGTACATCAGCTGCATCACGTAAGTGAAGCTGCTTACNTCAGGGAAATGCACACAGGTGATGCCCTCCCAGTGTCTCCTGNCGCTTCCGAGGCTGCAAAGCCACGGCGGTATAAACGAGCAAAAAAGCCCCAAGGTGTTGTCACCTAATAAGAAGACTGCAAAATCTTCTCCGAAGGGTGAAGAGGGAAAATGAAGAACTGAACCAAAGTCTTGTTTGGGAAACCCAATTGAATGGAAAAATTGTGCAGAATTTGAATGGTGGAAAAGAATAATTAAACCAAACCTTCCACAACCTTCCAAATTCGAATTGGAAAGGTCCAGGGTATTGGGGTTGAAACCCCGGTTACCTTTTGAAAAAACCCACCTATTCCCCCCCCCCTGCCTGTCCCCCCGGCCCCGGGGGGGTTAATTAAAGAGCAGGGTTTTTAATAAGGGGGGGGGAAGAAAAGGGGGGGGAAAGGAGGAGCTTCCCCCACAGCTTTTTTTCCCCAAAACCCCCTCTCCCCCTCTTTATAAATAATT | |||||||||
gi|218847444|gb|FC885409.1|FC885409 IC0AAA94DH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94DH03, mRNA sequence AAGAAAGCTGTGGGAGAACAT EST sequence (targeted fragment marked with yellow): AGAGTGGTCCTTGAAATAGCCTCTTTGTATGGGCTTCCTGCTTAATTCTTCCTCTCTAACATCGAGTGTAAAATGAATGGAAGATCATCAAGCCACAGATATGAGATCTGAACATTATTATTATTAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCCACTGTTTGCTGATTAATACACGGCTCTTGCTAGCTAGGCGCCGTATGTAGACACCGCGCGCCATGGGAGCTCAAGAAAGCTGTGGGAGAACATGGCACACCTTCAGGATTTGCCTGCTCGCCAGATACCTCATCCTTTGGTATGCCGGCGGCCCTGCCAAGATCTTCCCCACGGTCTTCTTCCCGGTAATCAATTGTATATATTTTACCCTTAATTCCTATACAATTATAACTTTTTATATTTATTTATTACTTCTTAGAATTGTATACACAGTAACCCTCTTAAATTCTTGCATTATCCTGTGACAGAAGCGCTTCTTTAAGCTAGCTAGCTGTGACTGTGATTCATGTTCAAAATGTGAATTTTCTCATTTGACACTGACAACAAGGTTCCAAAATATACGTTCAAGAACAGATCAAAATCACCCTGCAACATGATTTTGTCTTTGTTTTTACACACACTCATTTTATATTTACTGTTTTAACACATGAGCTCCATTATGCATGGAGTGTGTGTGTAAAAACTATCCTAGTTTGCTGTAAATTTTTTATGTACAGTTTTTCTTCGCAAATAAATGGGTTTGTGTGATTGCGTTCTGTACATTCCATTAAAATGGTGAAAAATGTATATTTACTTTTGCAGGGAGGAGAATCCCCAGCTTTAATTGCTTTCTAATATTTTATCTGGAAAAATTT | |||||||||
gi|218843775|gb|FC899561.1|FC899561 IC0AAA1AB09FM1 IVIA1 Citrus clementina cDNA clone IC0AAA1AB09, mRNA sequence AAGAAAGCTGTGGGAGAACAT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTCTTTTCCTTTTTCCATCTTTCCCATTTTTTAGGAAAAATTCTAGTATTCTACCAACTGTCATGTAACGACATCCCCCAAAAAAGCAATTTAGTTACACTGCCCTACATCAAGCAGGCACCTATATTCACTAACTGGTAAAAATTTATTCTTATAAATAAACTCTTCTCATACTTGCAATCCCATTAATGCTGCATCCATGTCCTCATAAATGGTCTTGCACTTTTTAAAAAAGTTAACTGCTCAGCCTTTAGCCATCCTATTTCGCCAAAAAACTAATAGTTTGATTGAACAATGAATCACTTTCAGTTCTCATGAAAATATGGCATTAACAAAGGCCTCTGCCCCCAAGGGTTGTAGGTCCCCCACACCTTCACCAACACCCACAAACTTTACAGGAATGCCAAGCTCATCGACAACACTGACCACACAGCCCCCTCTAGCAAAACCATCCAGCTTTGTCAAAATTAAACCAGTTATTCCGACAACATCATTAAATTCTCTTGCTTGGGGAAGCAAATTCAAGCCAGTAGTCCCATCCAAAACTAGTAGGATCTCATTAGGGGCACCGTTAACAACTTTGCCCACAGCTTTCTTGGATGCAACCAACTCTTCCATCAGGCTGTAGTTTGTGTGGAAACCTCCAAATGTGTCACACAAAACAATATCAAAACCCTGTTCTTTCCCTCTTTT | |||||||||
gi|218841100|gb|FC880474.1|FC880474 IC0AAA65DG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DG07, mRNA sequence AAGAAAGCTGTGGGAGAACAT EST sequence (targeted fragment marked with yellow): CTGGCTATGCAAGTGGTCCACCGGGTGCACCTAGAAGTTCATGGGGCACACAAACTCCCACTGGTTATGGTGCCATGGGCTATGGGAATGCTGCAGCATGGGGTGCTGGTGGCAGCAGCGGTGGTCCTGGTTCAGCGCATGCTGGTCAATCTCCTAGTGGAGCTACTGGGTATGGGAATCAAGGTTATGGCTATGGTGGGTATGGTGGAAGTGATGGATCTTATGGCAATCCCTCTGGTTATGGGGCAGTAGGAGGGCGTTCTGGGAGTGTCCCGAATAGTAATGCTGGTAACCAGGGTGGGGGAGAATTACAAGGGAGTGGTGGCGGTTACATGGGAAGTGGCTATGGTGATGCCAATGGCAATCCAGGGTATGGAAACGCAGCATGGAGATCTGATCCGTCACAAGCCTCTGGTAATTATGGGACTCAAGGAAATGGTTACGGTGGATACAGTGGTGCATCCCGACAAGCCCAACAACAGTGATTTGCTCCCTTGTAGCCAACTGGACTGTATCACTGTGATAGTCCCTTCTTTTTGGAGAGGAGGTTGTCGTGGTCTCCTTTTTCCCGCAGCATGGGGCACGGCTCAAGCTGATGCCGTTGCACTTTGGGACCGGTTGGATTGCTTGAATCCTAGTAGTTTGCTTTTTCTATTTTGCTAGTAATAAGAGTAGTTTCAAGGCGTTGCTAGATGCCCTTATTATACTTTATTTGCTATTGAGTGTAGTTTAAATTTGGCGTGCTTATAATTGTCTACTTCTACAGCTTTCTTTTTCTGTCGTAGTATTTTAAGCTATAGTGGCTTGATATTTCTTACGCTGGTTTGATTGCAGCATAACTTTTATGTCTCATCTTTCTTACGAAAAAATATATGCCACTAGAAATTCGCTGATTGTAGCCATGTTTGATT | |||||||||
gi|218784567|gb|FC921342.1|FC921342 C32103H03EF RVDevelopN Citrus clementina cDNA clone C32103H03, mRNA sequence AAGAAAGCTGTGGGAGAACAT EST sequence (targeted fragment marked with yellow): GATGTATCGTAGTCGTAGAAGTGTGATTGATGTTTGATGATCCGCGGTAAACGTATCTCCCTTGAAATCCCGCGACCCTGGTATCGAGACACCATTGTTGTCAATACTCAATTGTCTGAAACTCGAAAACTACATTACAACAACAACACACCTCATACTATTGGCCTGATTGTCTCTAAATTCCACCTGGACTGTGCAGCTATAAATATAAAGATCAGGGCATTGACTGCCTGAGCTCTTTTGACTTTTGACGGAGAAGACGAATGGGAGAAGGGAGAGAAGGAGATTGGGAGTGCAATGGGTGTAAGAATCGAAACTACGCGTTTAGATCTTTTTGCAACAGGTGCAAACAGCCCCGTCTTTTAGTCGACACCAAAACCCCTGCTGACTCGAAGTGGCTTCCTCGGATTGGCGATTGGATTTGCTCTGGTTGCACTAACAACAATTATGCATCAAGAGAAAAGTACAAAAAGTGCGGACAACCAAAGGAGATAGCAGCTATGCCAGCAATTGCAATGCCTGGAGCTTCTGTACCAACTTATTCACATTATTTTGATAGGGCCCCTGGAGGACTGGAACAAAGGATGAACATTGGTATAGGAAGCAATGGTGCTCTCCAACAGCTTCCTTTGAGCTCCAGCTGGTCATTGGGAAGGGATGAGAAGTTTGGAGTTAACTCTGCTGCTTCTTGGCC | |||||||||