| mature miRNA: AGATCATCTGGCAGTTTCACC species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110885707|gb|DY304233.1|DY304233 KN0AAQ8YC05RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence AGATCATCTGGCAGTTTCACC EST sequence (targeted fragment marked with yellow): TTCATACCTGTAGAGAAACCAACATTCATTCAAACATCATTTCCAATAAATCCAGTAACGTCGACGGCGTTTTCGCCAGTCTAATCAACGCCTTAATACCAAATCTATGAATGATATCTGTGTAGTTATACAGATTGATGAAATTTTATGTAATTTCTATGGAAAAATAAGCAGAGAGACGGACAGAAGTTAATATAAATTCAAAGAAAAACAGTCGCGGTTCTCATGAGTTGTTTTCTGCCGGCTTCGGTTCAATGGATTCTTCCGCCAACCGATCCTTCTTGAGAGCCTTCGATTATGACGGATCGAGTTCTTTGACATTCGGAGAGCGGATCTGTGCGGCGTGTATACCGTTGATTGCTATAATAGAAGCCGTCGTAATCACCGTCGCGAGTTGCTTTCGGTATCGGCCTCCAGTCCAGAAATGCCGCTTTGACGTCGGAGATCTTGCTCGACTTGCTGCTGAATCTCGATTTTCTGTTAATGAATTGGAGGCTTTGTCCGAGCTGTATAAGAATCTCAGTTGTTCAATTATCAAAGACGGCTTGATACACAAGGAAGAACTTCAAGTGGCACTCTTCCAAGCTCCATATGGCGAGAATCTCTTTTTGGACCGGGTTTTTGATCTTTTTGATGAAAAGAAAAATGGTGTCATTGATTTTGAGGAATTTGTACACGCACTCAATGTCTTCCATCCTTATGCCCCAATAGAAGATAAAATTGATTTCGCCTTCAGGCTCTATGATCTGAGACAAACTGGGTACATTGAGCGAGAGGAAGTGAAGCAAATGGTAGTAGCCATATTGATGGAATCTGAAATAAAATTGCCAGATGATCTTCTTGAAGCCATCATTGAAAAAACATTTGCAGATGCTGATATAGATAAGGGATGGGAAAACTCATAAAAAAGAATGGGAAGGAATTTGGCATTTCAAAAATCATCCCTCCTTAAAAAAAATGACTCTTCCATTAATTGGAGGGAAATCCACAAAAATTTTTTCAAGTTTTGGTTTTTACAACCGTAGGGTGGATCCCGGTGCAACCGTGGCGGTAGTAAAAATAAATAAAACCATAATAAAAATAATAAAAAAAAAGGTGGCACCTGGGCCCCCTTGGTCCCCCCCCCGTGGTCGGCCCCCCCCCCCCTTTAAAGAAGTTGTAAATGGATCAAAGAGCGTCTTGGGGTGGGGGGGACCAAGTGGACTTTTGTGGTGTTTCTTTCTTTTCCGCCTCTTTATTTTTTTATTTCTTTGGAGGTATAGATGGGCTGATTTTTTTCGCCGGCGGGTTTTGTTGTCTTATGTTTAG | |||||||||
gi|110837698|gb|DY258497.1|DY258497 KN0AAI2AB12FM1 AbsDev1 Citrus clementina cDNA 5', mRNA sequence AGATCATCTGGCAGTTTCACC EST sequence (targeted fragment marked with yellow): GGTGATCTGTGGTTGAGCAGGGATCGAGTTCTTTGACATTCGGAGAGCGGATCTGTGCGGCGTGTATACCGTTGATTGCTATAATAGAAGCCGTCGTAATCACCGTCGCGAGTTGCTTTCGGTATCGGCCTCCAGTCCAGAAATGCCGCTTTGACGTCGGAGATCTTGCTCGACTTGCTGCTGAATCTCGATTTTCTGTTAATGAATTGGAGGCTTTGTCCGAGCTGTATAAGAATCTCAGTTGTTCAATTATCAAAGACGGCTTGATACACAAGGAAGAACTTCAAGTGGCACTCTTCCAAGCTCCATATGGCGAGAATCTCTTTTTGGACCGGGTTTTTGATCTTTTTGATGAAAAGAAAAATGGTGTCATTGATTTTGAGGAATTTGTACACGCACTCAATGTCTTCCATCCTTATGCCCCAATAGAAGATAAAATTGATTTCGCCTTCAGGCTCTATGATCTGAGACAAACTGGGTACATTGAGCGAGAGGAAGTGAAGCAAATGGTAGTAGCCATATTGATGGAATCTGAATAAAATTGCCAGATGATCTTCTTGAAGCCATCATTGATAAAACATTTGCAGATGCTGATATAGATAAGGATGGCAGAATCAATAAGAAAAAATGGAGGGAATTTGCAGTTCCAAATCCATCCCTCCTAAAGAACATGACTCTTCCCAATTTGACGTACGTAATTACCTGGGCCTTTTAATCGGCTTTTCCTTCCTCAAAATGGGGGGGCCAATTGCAATTTAAACCTATGATCCCACTGGTCATTTTTGACCTAAAAAAGGCCAAAAATCTGGCCC | |||||||||