| mature miRNA: CACCAAAGGCCTCCGCCCTTC species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218826585|gb|FC896900.1|FC896900 IC0AAA50DD08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA50DD08, mRNA sequence CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): CGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCGACTTCCCCAGAGCCTACGGTAGCACAGCCGAGACAGCGACGGGTTCTCTGCCCCTGCGGGGATGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGACGAGCCGTTTATCATTACGATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCGATCAGGCACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAACACGAAAAACCCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGCCCTCCCTCTCTATCTATACAAGGGATGGAAGGGCGGAGGCCTTTGGTGTCCCCTCCAGTCAAGAAGTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCGCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTG | |||||||||
gi|110856765|gb|DY273054.1|DY273054 IC0AAA32DE04RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): TGTTCTTTCTGACCATACGAGTGAGTGAGAGAGACTGATTTGTGAAGGGAGAGAGGAAAAATAAAAAAAAGAGCTAAAAAGAAAAAAAACGACGGCGTTCTTGTAGAAATGAGATTGGTCGGTGACTGTACGTACGGTGAAGGTGGCGGTCAGGGGAAGGTTGTGGTGGTGGGAGTGAAGTTCGATGGGGAGAGTAGGGAGTTGCTGACGTGGGCGCTGGTGAAGGTCGCACAGCCCGGTGACTGTATCATTGCTCTTCATGTTCTCGACACCATTACTGAGAGCACTGGTTCGCTCCTGTCTTTAGTCAAGACTTTTGATTCTATGCTTTCTGTTTACGAAGGTTTCTGCAATCTCAAACAGGTTGATTTGAAGCTGAAAGTGTGTAGAGGGACATCAGTGAAGAAAATCATTGTGAAGGAAGCGAAGTCATACGGTGAAGCTAAAGTAATTGTGGGTATTTCTAAGACTCATCGCACAATCCGTTCATCAGTCTCTGTTGCCAAGTATTGTGCAAGAAAATTGTCCAAAAATTTCGGAGTTTTTGCTGTTGAAAATGGCAAAATTGTTTTCCAGAGAGAAGGAACACATAATTTGCAAGATGATGTTCCAGGAGAATGTACTAATTGTGATTCTAGAACGCAATCGTGTGAAGAGTTAGCTCGGGATGAGACTGTAGTAGACAATTCATTAGCGTTGGTTCCAGTTCAAAGTGATAATTCCCTTGTTGTTCGAGAATCACCGAGGTCAAAACAGGATGGTTGGCCGTTCCTTCCGAGGGTGCTCTTACCCAAGCCTCAAGACCCGGAAAAAACTTCTGCGAAGAAAACTTCTTTGATTCAGGGGGTGCCGAGATTTCCCAGGCCGGGATCTTCTGCTGGTGGGGATCCCGATCATAAACAAAATCATTCTGCTGAACCCAGGGAGGAAAATCCTTTCCACCTGGATGGGGAAAAGCGGGGGCCTTTGGTTCCTGTTGAACCAGAGCCCCGGTTGGCCCCCCTCTTTCCCCC | |||||||||
gi|110859937|gb|DY279004.1|DY279004 IC0AAA48AH01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): CTCATCACTTTCTCTGCAAACATGAAGCTTCAAAAACTCTCTGTGGCGTTTAAAATCTTGAGCTTCAATTTAATTATTATTATTCTCCTGCAAGTTGAATCCTTAACGCCGGCGAACAACGACTACGCTTTCTTTGACATAAACTCGTTGGGCTCATCAACAACAGCAGCAACAACGCCGGCTTTGAAACCCGACGGCGGCAGCGTCAAGAACCGATCGTCGACGTCACGGAAGTCGTTTTCGAGCTGCGGAGTGTGGAGCAGGGCGTGCTCGAAGGAGGTGATGGAGCTGGCGCGGCGGCCGGAGACGGTGGATTGGCTGAGGAGTGTGAGGAGAACGATTCATCAGAATCCGGAGCTTGCTTTTCAAGAATTTGAAACCAGCAGGCTCTTGAGGGCCGAGTTGGATCGGATGGAGATTGGATACAAATACCCGTTGGCCAAAACAGGTATCCGGGCATGGGTCGGGACAGGCGGACCGCCGTTTGTTGCCCTCAGAGCTGACATGGATGCACTTCCGATTCAGGAAGCCGTCGAGTGGGAATACAAAAGCAAAGTGGCTGGCAAAATGCATGCCTGTGGACACGATGCGCACGTTGCCATGCTCATCGGTGCGGCCAAGATCTTGAAGAGCCGCGAACATCTTTTAAAGGGAACTGTAATCTTGATATTCCAGCCAGCGGAGGAAGCTGGCAATGGTGCAAAAAGGATGATGGCTGATGGGGCTCTAGAAGATGTCGAGGCAATATTCGCCGTTCACGTGTCCCACGAGCATCCTACCGGTGTCATTGGTTCCAGGCCAGGTCCTTTGCTAGCCGGCTGTGGCTTTTTCATGCTGTAATTAGCGGAAAAAAAGGTGGTGGCGCGAACCCACACCGCTCAGTTGACCCTGTTTTGGCAGCCTCAGCAACTGTGATTAGCTTAAAAGGGCTTGTCTCAGGAAAAGCAAATCTTTGGAATCTCAGGTTGGGTCTGGACTTTATTCCACGGGGGAAATCATCTCCAAATGAAACCCGAAGGCTGGGGGCCTTTGGGGGATCCTTTAAAACCTTTTCCTAACACTAATTTCCTACCCACCTCCAACAAAAAAAAAAAGGGAGGGTTATTGGCTAAACAGGGTTAGGGTTTTTTAGGGGGCCCCGGCAAAAAGGGGGATTTTTCTTTCAAAAAGGGGA | |||||||||
gi|110856386|gb|DY272439.1|DY272439 IC0AAA31AF08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): CGTCGATCCAAATTCGACGTTCAGAGAGCAGCAACAAAAAACTCGCAATGACAACAGTTTTTCCCACCTCCGAAGAAGATCCCGCTCTTGCTGTCGTCCGCTTCACATCCGAGCTCGCCTGGGCCGATGCCGGTCCTGAGGCTGCAGAAGAACAAGTTAATAGGCTTTGTTTGGAAGCACAAGAAAGCATGGTCATGGGGAGATGGATGGATTTGGCTTCTCTGATGCTCACTTCGGCTGACTTGATGTTCTCAAAAGTATCTGATAAAGATCTTGAGTGTATCTTCACCGTTATCTGCAATCTTGTCACAAAGCCTGAAAGCCTTGATGAAGTGCATGAGATGACAAAACTTATATCTGGGAAAATCATTCAACAGTCAAATGACAAGCCTGCAATGCGCTTGAAGATGTAATGTGGTGTGATAATTGCAATTTGAACTTGTAAAACTTTGAAAGCTTTCTTTAATGTTTTTCCATTTCTTTTCAACAGCTTGTTCAATCTCTATAATTTGCTAGAGAATCCCTACAGCCGGTTCTTTGTATACATGAAAGCCCTTAATTTGGCAGTTAATGGAAAAGTGACTGAACATATAATACCTTCTTTCAAAAAGATAGATAGCTTCTTGAAGGAGTGGAATATTGATATCAAGGATAAAAGAGCACTTTTTCTTGGCATTGCTAATGTTCTCAAAGAAAGTAGAAGCTCATCCAAGGATTCTTTCAAATTCCTGACTAAGTATTTGGCAACTTTCTCTGGTGAAGATGCTCACACCATGGATGAAGCCAAGGAGGAAGCTGTGCGCACGATTATTGAATTTGTGAAGTCACCTGACATGTTTCAGTGTGATCTATTAGATATGCCTGCTATAGGTCAATTGGAAAAGGACGCGAAATATGCGTCGGTATATCAGCTTCTGAAGATCTTCCTAACTCAGAGGCTGGATGGATACTTGGGAATTCCAAGCAGGGAATTCTGCCTTACTGAAAAGCTATGGGTAAGTTTTCTTGGAACTGGTCCTTTCCCTTTTAATGGGCTGTTTCATTTGCCAAATCTGGCCTTCAAATTTCCATTATCCTTTAATTCCTTTTTCCTGGCATGGGGGTAGGCCAATTTTCCCAAAGACGGCTAACCAAAAAAGAAGGTTGAAGGCCTTTGGGGGGATTTTTGGGCTTTAAATAAATCTCGGGGCCAAATTCCCCTGAGGGGCTTATAATTAGGGGAGAAAACCCTTCCGGGGGGATAAATCTTTTCCCACCCCTCTTTTCTTCCTTTCTGGGGGGTAATTTTGGGGGGGGAGAGGGGGGGGTTATAATTTTTTTTTGGTTGTGTGTT | |||||||||
gi|110878678|gb|DY298501.1|DY298501 IC0AAA95CH12RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence CACCAAAGGCCTCCGCCCTTC EST sequence (targeted fragment marked with yellow): CGACTTTCGCCGCGGACGCATGTGGTGTAATTGCAGCCGTGCAACTTAGCAGTAACTATGAGGAGCAGTATATTAGTGGCAGTCGTGCTGCTGGCGGCTGTCTGCGTCCAAGCTGAAGTGCAGAAGCACCGGCGCAGACACCGGCGTCTCCGCAAGACGACGACCGCGGCGCCCCCGGGGCTGGAGCCCGCCGCGCCGCTGGACCTGGCCGCCCTGGCCGCCATGGAGGCGCTCGACGAGCAGCAGTTCCAGGAGGCGCAGCGCGAGCGGCTCAACTCGCTGTACGAGGAGGCGGACGGCGAGATGGAGGACCCCTGCGGGCGCGTGCACTGCAGCGCCGGCCGCGTCTGCGAGATCGACGAGCAGGGCGAGGCGTCCTGCAACTGTATCAAGGAGTGCCCCTACGAGACGGACCAGCGCCGCAAGGTGTGCACCACGCACAATGAGACGTGGTCGTCGGACTGCGAGGTGTTCCGCCAGCGCTGCTTGTGCCTCGAGGGCTCCGACCTGTGCCTCGGCCCGCAGTACCACCACGTGCAGATCGACTACTTCGGCGAGTGCCGCGAGATGGCCGACTGCAACGAGGGACGAGATGGCCGACTTTCCGCGGCGCATGGCGCGACTGGGCTCTTCAACATGCTGCGCAACATGGCCAAACGCCAAGAGCACAACTCGCACTACCTGGCCATGGGAGCGCGAGGCGGGAAACAACCTTCACGCCGGCGCTGGAACCAACGCTGCCCAGCCTGGAAGTGGTGCGACCTGGACGCCGGGCGGGAAGTACGAACGGGTTCGGGGCGAAGCACGAGGCTGAACCCGATTCCGCGCGGCCGCTGAAGTTCTCGGGAGGATTGGATTGCGCCCCTTTCCTGGAAAAAATGGGACTCCCGATGGAGGGGAGGGAATTTGAGGGTTCGGCCGAGGGGGGTGGCGGGGGGGGGGGATGTGGGGGACGCCGGGGGGGGGGGGGGCGTTTGGTGGTGATCTTGTCCAAGGAAAGGGTGGGGCTGAAAAAGGGTGTGCCGCATGATGTCCTAAGG | |||||||||