| mature miRNA: TGAACCGAACCAAACCGAAAT species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218839297|gb|FC879574.1|FC879574 IC0AAA10CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10CC06, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): AACAATTATGGCTCTTCACGTTCTCTTCCTCACAATATTCTTCATCTTCCTGTCCTACAAGCTTTACCAAAAGCTCAGACTGAAGCTACCACCAGGGCCACGGCCATGGCCCGTCGTGGGAAACCTCTACCACTTAAAACCTGTCCGATATCGGTTGTTTGCCGAGTGGGCTCAGACTTACGGGCCTATAATGTCCGTTTGGTTCGGTTCCACTTTAAACGTCGTTATTTCGAGCTCGGAGTTGGCCAAGCAAGTTCTTAAAGAAAATGATCAACAATTATCAAATAGGCGCAGAAGTAGAGCAGCTCTTAGGCTTTCTAGAAATGGAAAAGACCTTATTTGGGCTGACTATGGTCCTCATTATGTTAAGGTTAGAAAAGTTTCTACTCTTGAGCTTCTGTCTTCCAAAAAGCTTGAGGCCCTTAGGCCAATTAGGGAAGATGAAGTCACTGCCATGGTTGAATCCATCTTTAGAGACTGCACTAACCCAGAGAAAAAGGGGCAGAATATGAAACTGAGGGATTACTTGTCAGCAGTATCATTCAACAACATTACAAGACTTGTTCTTGGAAAGCGATTTATGAGCCCAGAAGGTGTACTGAACGAGCAAGGTATTGAGTTCAAGGACATTCTTGGAAATGGAGTCAAGCTCGGGGCTCCTGTAACATTAGCAGAATACACTCCATGGCTAAGATGGATGTTTCCACTAGAGGAAGAGAAATATGTGAAGCACAATGAACGCAGAGATAAGCTTACGAAAACCATAATGGCAGAACATACCCTTGCTCGTCAAAAGGGTGGAGGAGCTGCTAAGCCACACTTCGTTGATGCGTTGCTCAATTTGCA | |||||||||
gi|218798216|gb|FC871932.1|FC871932 KN0AAB3DE10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DE10, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): GGGGGCTCAAGCACAGCTTCTTTTCTTTTGAGTTTTGAATACGGTTCAGTCGAAGCCAGCAGAAATCTTTCGCCTTCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGTCGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATTAATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGATCACACTGGTTAAGAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGAAAATAAAAGTATGGGTACTGTTATTACCCGTCAATTGTACGATGGTCTCAGTTTGGTTCGGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCTCTTTGTCTAGCTATTTATGTGTACCTTGTTTTCCTAAAAAAAAAATAAATAAAAAAATTTAATAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|218789920|gb|FC869061.1|FC869061 C31008B01EF AbioticL1 Citrus clementina cDNA clone C31008B01, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): ATGTTGATTTGGTTCGTTTCAAGTTTAGTTGGAGCGTTGAACTAACATGTTTTGATCACTTGCTGAAGGTCTTTTCAATCAAAATGGAGTACGAAGGCCGTTACCGGATGGCTGCTGCGAAATATGATTGCCTTCTGTTTGATCTAGATGATACCCTGTATCCCTACAGTTCTGGTATTGCTGCAGCATGCGGACAGAACATCAAAGATTATATGGTTGAAAAGCTTGGCATTGAGAGGAGCAAAATTGAGGACTTGGGTAACTTGTTGTACAAGAATTACGGGACAACAATGGCTGGGCTCAGGGCTATTGGCTATGACTTTGACTATGATGACTATCACAGTTTTGTGCATGGGAGGTTGCCTTATGAGAACTTGAAACCAGATCCTGTTTTGAGGAGTCTTTTGCTGAGCCTGCCCCTAAGGAAAATTATCTTCACAAATGCGGACAAAGTTCATGCTGTTAAAGTTCTCAGCAGGCTCGGATTGGAAGACTGTTTTGAAGGGATTATATGCTTTGAGACTCTGAATCCGACTCACAAGAACAATGTTTCTGATGATGAGGATGACATTGCGTTTGTGGAATCGGCTGCTTCCACCACAACTAGCGCCAATGGCCCTGAAATTTTCGACATAATTGGTCATTTTGCTCAACCAATCCAAGCTTGGTTGCATTGCCAAGACTCCCATTGTGTGC | |||||||||
gi|218823782|gb|FC915026.1|FC915026 IC0AAA12AA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AA07, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): AAACCTCTACGACATAAACCCGGTGAAGTTCCGGTGCTTTGCTAAATGGGCTCAACAATACGGACCAATCATTTCGGTTTGGTTCGGCTCGACTTTAAAAGTGAATGTGTCCAACACAGAATTGACTATAGAAGTGCTTAAAGAGCATGATCAACAATTGGCCGACAGGCATCGAAGTATATCAACTGCAAAGTTCACCAGAGATGGCAAGGACCTCATTTGGGCCGATTATGGGCCTCACTACGTCAAGGTTCGTAAAGTCTGCACGCTCGAGCTTTTTACGCCGAAGAGATTACAGGCTCTGAGACCAATTAGAGAGGATGAAGTCACAGCCATGGTTGAATCCATTTTCAAAGACTGCACCGATCCTCAAAATTATGGGAAGAGTGTACTAGTGAAGAAGTATTTGGGAGCAGTGGCATTCAACAACATTACAAGGCTAGCGTTTGGGAAGAGATTCGTGAATTCAGAAGATGTGATGGACGAGCAAGGGAAAGAATTCAAGGCAATAGTAGCTAATGGGCTGAAGCTTGGGGCATCGCTAGCTATGGCTGAGCACATTCCATGGCTTCGTTGGATGTTCCCATTAGAGGAAGGGGCATTTGCCAAGCACGGCGAAAGCCGAGACCGTCTTACTCGAGCTATCATGGAAGAGCACACACTTGCTCGCCAGAAAAGCGGGGGGTCCAAGCAACACTTTGTTGATGC | |||||||||
gi|218819124|gb|FC884447.1|FC884447 IC0AAA10DA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10DA12, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): CTCTCTCACACACTAGCCGACACACACATACACCCTCACCATCTGTCTCACTCTCGCTGATACACACATTCCATCCACCACTGTCGCTTATTAGCCAGCCTGTCACCGTAGTCGTCGCCATCGCGCTCGTGTCAGCCTGTCGTAGTTCATCCGGTCGTGCTCGTGTCAGCGTCGCCTCCCGTTCGTTGTGGTCGTGTCGTCGGTAGCCCGCCGCTGCTGTCGTGTCGGTGGACTTGTGTAACTTGTGTTTACATTTTTTATTTATTCGTTGATTTTGATGGAAAGATTTGGAAGCAAATGAAAAGGTCAGTTTTATAATTACAAATTATTTGAAACATCCAAATAAATTTTCATGAAGTTCACGAGGAGGCTGTTGTTTTCAATTGAATCAATTTTAAGTGTGCTTGTAGCAGCTGCCATGCTCAATAATCCATTTCACACCTGAATTTCAAAACACTTGTTTTCCTTAATTTTGTGAGTTCGGATTCATAAATTGGAGTTTAATTTGTTGGGTGTTTTATAAATAAATTGTTGAATGAATCTAATCACCAGCAAAGGGCTTCCTCATCCATTTTGAACCGATCCACCCGTTTGTGAACCGAACTGATCACAAAATCGAACCGATCGAATCATCTTTGGTACGGTTCAAAAGTTGGTTCGTATTCGGTTCCAGCTTTAAAGAATCGATTGATTTCAGTTTGGTTCAGTTCTTCGACTGAACCGAATTGTACCAGATATGCCCAGCCCTAATCTGATATGTCGAGTTAGGTCTCTGTAGTACGTTAGGTTTTATTTATTATAAGAGCCCATAGTCTAAGTCATACTCAAAAACTATTTAAAGAGTTGAGTATTATCTTAAAATTTTTATATAGCCTTGTAATTTTTCTTAGCCACTGGGCAAACGTTGGATAATTTCCTCAAAACCTCTTGTCATGTTCATACTGT | |||||||||
gi|218836854|gb|FC895145.1|FC895145 IC0AAA69DE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69DE12, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): TCTGTTTGTTTCTTGGGAATTTGGAATGGATGGGCTGGAGGGAAAGTCAGAGGTTGCAGGAAATTATAAGAGAAAGCTGAATCATGGTGATTTGAGTCTGAGGGTATTGGCCTTGGCGCTAACACTTGTCGCAGCAATAGTTCTTGGAGTTGGTAAGCAAAATAAGGTTGTTCCACTCAAGATTATACCAACTTTGCCTCCTGTTAATGTTGCAGTCACCGCTAAGTGGCAGTACTCTTCTGCTTTTGTGTTCAATGTGGTGTCAAATGCCATAGCATGCTCATACGCAGCAATCTCTCTACTCCTTTTGTTGGCTGACAAGAATGGAAACAAGGGCTTGGCTATGTTGATCCTTCTTCTTGACCTAGCAATGGTAGCGCTGCTCTTTTCGGCCAACGGCGCCGCTGGTGCCGTCGGCCTCGTGGGCTACCAGGGGAATTCGCATGTGCAATGGAGAAAGGTGTGCGACGTTTTTGGGGAATTTTGCAGCCACGTTGCAGTCGCAGTTGTTCTCTCTCTCCTTGGTTCACTGGCTTTCTTCTTGCTAGTTGCCTTGGCTGCAATGAGAATTCTCAAGAAAACCAACTAGAATCAATAATTTGCATGTTCCTTAGGGAACCCTTATGCTAATTAATTTGGTTTGGTTTGGTTTATTTTCTTCACTAAGCGACTTATTATGAACTTCGAGACAATGAGGCTAGTTTCTGTATATCTATCAACCTTTGGAATTTGCCCAAAAAAATGAATATGAAGACTGGAAACTTTTCTGGATTTGCAGAGTAATTTTAACACTTGCAACATTTACTAGATATATGTTGTGACAAGTTAGACTTTGCACATTACAATCACGACTTTCAATGTATACAAGTGTTAAATCTCAGGGAACCTGGTGTTTGCCACCTTACTACTGTTGACACTGGCTGCAAGTATGTAATATTAAGAGATTCCTATGATTATGATGTTGTCACTCG | |||||||||
gi|218836147|gb|FC926715.1|FC926715 KN0AAP2YD24FM1 TF Citrus clementina cDNA clone KN0AAP2YD24, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): CTTCACATTGTCTGGTTACCTTAAAAAATGGCAGCTAGCTCCGGTTCCAAGTCAATTTTCATGTCCATTGTCCTGTCCCTATGTCTCCATTTGACACTCAGCAGTGTTACTTATGACAGCAAGGCTCTTATCATTAATGGGCAGAGAAGAATTCTCTTCTCTGGCTCCATTCACTATCCAAGAAGCTCACATGAGATGTGGGAAGGCCTCATACAGAAAGCAAAAGATGGTGGGTTAGATGTTATTGACACTTACGTGTTTTGGAATGTCCACGAGCCTTCTCCTGGCAATTATAATTTTGAGGGGAGATACGATTTGGTTCGGTTCATCAAGTTGGTGCAGAAAGCCGGGTTGTATGTGCATCTTCGAATTGGACCATACATATGTGCAGAGTGGAATTTTGGTGGGTTTCCTGTTTGGTTGAAGTTTGTCCAAGGCATCAGCTTTAGAACTGATAATAAGCCTTTCAAGCATGCAATGCAAAATTTCACCCAAAAGATTGTCCAGATGATGAAGGATGAAAAGTTATTTAAGTCTCAAGGTGGACCAATAATCCTCTCTCAGATTGAGAATGAATATGAACCCGAAAGAGAAGAATTTGGAAGTGCAGGTGAGGCTTATATGAAATGGGCAGCTGAGATGGCTGTTGAGTTAAATACTGAAGTCCCATGGGTTATGTGCAAAGAGGAAGATGCCCCAGATCCTGTGATAAACACATGCAATGGCTTTTACTGTCACTCTTTCTCTCCAAACAAACCTTCTAAACCGAAAATGTGGACCGAGGCTTGGACTGGCTGGTTCTCAGATTTTGGTGGCCAA | |||||||||
gi|218794221|gb|FC886658.1|FC886658 IC0AAA52AC04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA52AC04, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): ATTTCATTTCCGAAGTTTCAAGAAAAAAGGAAACCAACCAACACAAAATGGCTCTCCCACTCATCCCATTATCAATCATTTTCATCATCCTTGCATACAAGCTCTACCAACGGCTGAGATTCAACCTCCCGCCCGGCCCTCGTCCGTTGCCAATCGTCGGAAACCTCTACGACATAAAGCCGGTGAGGTTCCGGTGCTTTGCGGAATGGGCTCAACAATACGGCCCAGTCATTTCGGTTTGGTTCGGCTCGACTTTGAACGTGATTGTGTCCAACACAGAATTGGCTAGAGAAGTGCTTAAAGAGCATGATCAACAATTGGCCGACAGGCATCGAAGTAGATCAGCTGCAAAGTTCAGCAGAGATGGCAAGGACCTCATTTGGGCCGATTATGGGCCTCACTACGTCAAGGTTCGTAAAGTCTGCACGCTCGAGCTTTTTACGCCGAAGAGATTAGAGGCTCTGAGACCAATTAGAGAGGATGAAGTCACAGCCATGGTTGAATCCATTTTCAAAGACTGCACCGATCCTCAAAATTATGGGAAGAGTGTACTAGTGAAGAAGTATTTGGGAGCAGTGGCATTCAACAACATTACAAGGCTAGCGTTTGGGAAGAGATTCGTGAATTCAGAAGATGTGATGGACGAGCAAGGGAAAGAATTCAAGGCAATAGTAGCTAATGGGCTGAAGCTTGGGGCATCGCTAGCTATGGCTGAGCATATTCCATGGCTTCGTTGGATGTTCCCATTAGAGGAAGGGGCATTTGCCAAGCACGGCGAACGCCGAGACCGTCTTACTCGAGCTATCATGGAAGAGCACACACTTGCTCGCCAGAAGAGCGGTGGTACCAAGCAACACTTTGTTGATGCTTTGCTTACACTGCAAGAAAAATATGACCTA | |||||||||
gi|218843229|gb|FC872852.1|FC872852 KN0AAB2AB10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB10, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): AACTAAAGTTTTGATTTCGCTTCATTCACCGTAAGCTAGCAGAGATTTTCCCCTTTCTACTTTGAAGAATATGGAAACTATTTGCGCAGGTAAGAACGAATGGTCAGAGAGTGAGTACTCACATTTTAGTAGCATTGCTGATGATGAGGATGTGAAAAATGACAATCTTAATCTTCTTATTGTCCCGCAATATGGAAGAAATCCTGACTCTACTGGTTAAATACATATAATATTATTCTTTTATGTTTAATTAAATAAAAGGACGGATATTACTATTACCTGTCAATCATGTGAGTGTCGTTTTGGTTCAGTTCAACTATTAAGATTTCTTGAGATGTTCAAGAAATTATCTTTGTTAGTGTCCATGTACTAAGTCTTTCTTAATAAATAAAATTATTCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|218808051|gb|FC891158.1|FC891158 IC0AAA61BC01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA61BC01, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): CAAAATTCTCTATTCTTTGAAGGGTTACTTGTCTGTTTGTTTCTTGGGAATTTGGAATGGATGGGCTGGAGGGAAAGTCAGAGGTTGCAGGAAATTATAAGAGAAAGCTGAATCATGGTGATTTGAGTCTGAGGGTATTGGCCTTGGCGCTAACACTTGTCGCAGCAATAGTTCTTGGAGTTGGTAAGCAAAATAAGGTTGTTCCACTCAAGATTATACCAACTTTGCCTCCTGTTAATGTTGCAGTCACCGCTAAGTGGCAGTACTCTTCTGCTTTTGTGTTCAATGTGGTGTCAAATGCCATAGCATGCTCATACGCAGCAATCTCTCTACTCCTTTTGCTGGCTGACAAGAATGGAAACAAGGGCTTGGCTATGTTGATCCTTCTTCTTGACCTAGCAATGGTAGCGCTGCTCTTTTCGGCCAACGGCGCCGCTGGTGCCGTCGGCCTCGTGGGCTACCAGGGGAATTCGCATGTGCAATGGAGAAAGGTGTGCGACGTTTTTGGGGAATTTTGCAGCCACGTTGCAGTCGCAGTTGTTCTCTCTCTCCTTGGTTCACTGGCTTTCTTCTTGCTAGTTGCCTTGGCTGCAATGAGAATTCTCAAGAAAACCAACTAGAATCAATAATTTGCATGTTCCTTAGGGAACCCTTATGCTAATTAATTTGGTTTGGTTTGGTTTATTTTCTTCCCTAAGCGACTTATTATGAACTTCGAGACAACGAGGCTAGTTTCTGTATATCTATCAACCTTTGGAATTTGCCCAAAAAAATGAATATGAAGACTGGAAACTTTTCTGGATTTGCAGAGTAATTTTAACACTTGCAACATTTACTTGATATATGTTGTGACAAGTTAGACTTTGCACATTACAATCACGACTTTTCATGTATACAAGTGTTAAATC | |||||||||
gi|218837440|gb|FC896603.1|FC896603 IC0AAA16BB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA16BB04, mRNA sequence TGAACCGAACCAAACCGAAAT EST sequence (targeted fragment marked with yellow): CATTTCCGAAGTTTCAAGAAAAAGGAAACCAACCAACACAAAATGACTCTCCCACTCATCCCATTATCAATCATTTTCATCATCCTTGCATACAAGCTCTACCAACGGCTGAGATTCAAGCTCCCGCCCGGCCCTCGTCCCTTGCCAATCGTCGGAAACCTCTACGACATAAAGCCGGTGAGGTTCCGGTGCTTTGCGGAATGGGCTCAACAATACGGACCAATCATTTCGGTTTGGTTCGGCTCGACTTTGAACGTGATTGTGTCCAACACAGAATTGGCTAGAGAAGTGCTTAAAGAGCATGATCAACAATTGGCCGACAGGCATCGAAGTAGATCAGCTGCAAAGTTCAGCAGAGATGGCAAGGACCTCATTTGGGCCGATTATGGGCCTCACTACGTCAAGGTTCGTAAAGTCTGCACGCTCGAGCTTTTTACGCCGAAGAGATTACAGGCTCTGAGACCAATTAGAGAGGATGAAGTCACAGCCATGGTTGAATCCATTTTCAAAGACTGCACCGATCCTCAAAATTATGGGAAGAGTGTACTAGTGAAGAAGTATTTGGGAGCAGTGGCATTCAACAACATTACAAGGCTAGCGTTTGGGAAGAGATTCGTGAATTCAGAAGATGTGATGGACGAGCAAGGGAAAGAATTCAAGGCAATAGTAGCTAATGGGCTGAAGCTTGGGGCATCGCTAGCTATGGCTGAGCACATTCCATGGCTTCGTTGGATGTTCCCATTAGAGGAAGGGGCATTTGCCAAGCACGGCGAACGCCGAGACCGTCTTACTCGAGCTATCATGGAAGAGCACACACTTGCTCGCCAGAAGAGCGGTGGTACCAAGCAACACTTTGTTGATGCTTTGCTTACA | |||||||||